KEGG   Malassezia sympodialis: MSY001_1002
Entry
MSY001_1002       CDS       T06541                                 
Name
(RefSeq) uncharacterized protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
msym  Malassezia sympodialis
Pathway
msym03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:msym00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    MSY001_1002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msym03021]
    MSY001_1002
   03019 Messenger RNA biogenesis [BR:msym03019]
    MSY001_1002
Transcription machinery [BR:msym03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     MSY001_1002
Messenger RNA biogenesis [BR:msym03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     MSY001_1002
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_RBM22
Other DBs
NCBI-GeneID: 30055887
NCBI-ProteinID: XP_018739611
LinkDB
Position
Unknown
AA seq 268 aa
MTNVLALPVAYVPSHATTSLFSSLRQRRPPSEDDWPHNEFDFEPYVKRELQIRLESDDEV
CPRFERHRRCELGGRCTLRHCVTPSPHVPALLGREGSRRTVCKHWLRSLCKKGDLCDYLH
EYDLRRMPECRFYSTFGYCHSGDECLHVHIEPEVKRRRCERYDRGFCELGPECPKKHVRR
LACPYYLAGFCPLGPECNLGHIKALIPTPESRAATPLLTHRPLSMAEAFGGAPGIQEVPT
DPRTGRAIVPARHWAAAAELRKVRAVAS
NT seq 807 nt   +upstreamnt  +downstreamnt
atgacgaatgtgctggctctcccggtggcctacgtgccgagccatgcgacaacgtcgctc
ttttcgagcttgcggcagcgccggccaccaagtgaggatgactggccccataacgaattt
gactttgagccgtatgtgaagcgggagctgcagatccgactcgagtcggacgacgaagtg
tgcccgcgctttgagcgccaccggcgctgcgagctgggcgggcgctgcacgctgcgtcac
tgcgtgacgccgtcgccgcatgtgcccgcgctgcttgggcgcgagggctcgcgccgcacc
gtgtgcaagcactggttgcgcagcctatgcaagaagggcgacctgtgtgactatctgcac
gagtacgacctgcggcgcatgcccgagtgccgcttctactcgacgtttggctactgccac
tcgggcgatgagtgcctgcatgtacatatcgagccggaggtgaagcgccgccggtgcgag
cgctacgaccgcggcttttgtgaactgggccccgagtgccccaagaaacatgtgcggcgc
ctcgcgtgcccgtactacctcgctggcttttgcccgctggggccggagtgcaaccttggc
cacatcaaggcgctgattcccacgcccgagtcgcgcgccgcgacgcccctactcacgcac
cggccgctgtcgatggccgaggcattcggtggcgcccccggcatccaggaggtgccaacg
gatcctcgcactggacgtgcgatcgtgccagccaggcactgggccgctgcggctgagcta
cggaaggtgcgcgccgtcgcgagctga

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