Malassezia sympodialis: MSY001_1226
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Entry
MSY001_1226 CDS
T06541
Name
(RefSeq) uncharacterized protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
msym
Malassezia sympodialis
Pathway
msym03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msym00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSY001_1226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msym03019
]
MSY001_1226
Messenger RNA biogenesis [BR:
msym03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MSY001_1226
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MSY001_1226
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
WKF
Motif
Other DBs
NCBI-GeneID:
30056111
NCBI-ProteinID:
XP_018739824
LinkDB
All DBs
Position
Unknown
AA seq
568 aa
AA seq
DB search
MAARKLQSRSTIQLTATAEIDRTFKKVAEGVELFEGLYDKLQTSPNPGHKEKLESDLKTQ
IKKLQRLRDQIKTWLQSSDIKDKKPLLDHRRLIETQMEKFKAAEKEMKTKAFSKEGLIAA
AKLGPEEKAKLEMSNWLTSMVDELSRQIEAAEAEIEQMMATSKKSKKSTSKEDRAGTLEH
QNERRQWHISRLEILLRMLENGSLEVDQINDIKEDISYFVESNAEEDFEEDEGIYDEFNL
DEEEEAFGLRDAEEEKIESPPTPPPAPAPEEPVAKAAAKETKKDEVPPPKAKDEKEKKAK
KAATTASGKLQPTSLPVPPPAHKTPAPAATLPPIRYAAAAAAAVATTPAAGAPSPSTAVP
VPASETAADTSATDVPVEAEGDVSAASADASGAAPARSDARLPDTLSDLVTSFEWAKQKA
LLRDSNLSHVQRSLDASYAGGAPEPVDSESPKHYVPKDPFPTPSYYPQSPASLFDNPALY
AKFDVDTLFYIFYYQQGTYHQYLAARELKKQSWRFHKQYLTWFQRHSEPQAITDEYEQGA
YVYFDWEGSWCQRRKNDFRFEYRWLEDN
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacgcaagctgcaaagtaggtcgacgatacagctaaccgcgacagccgagatc
gatcggacgttcaaaaaggtggcggagggcgtcgaactcttcgagggcctatacgacaaa
ttacagacctcaccgaatccagggcacaaggagaagttagagtcggacctcaagactcag
atcaagaagctgcagcgcctgcgcgatcagatcaagacatggctccagagcagcgacatc
aaggacaagaagccactgttggaccatcggcggctcattgagacgcaaatggaaaagttc
aaggccgcagaaaaggagatgaagaccaaagccttctccaaagagggcctcatcgccgct
gcgaagctgggcccggaggagaaggcgaagctcgaaatgtccaattggctcacatcgatg
gtcgacgagctgtcgcggcagattgaagccgccgaggcggagatcgagcaaatgatggcc
acgtcgaagaagagcaaaaagtcgacgtccaaagaggaccgcgccggcacgctcgagcac
cagaacgagcgccgacaatggcacatatcccgtctggagatcctgctccggatgctggag
aacggctctctcgaggtcgaccagatcaacgacataaaggaggacatctcttactttgtc
gagagcaatgccgaggaagatttcgaggaggacgagggcatctatgacgaattcaacctg
gacgaggaggaagaagcattcggtctccgggatgccgaggaagagaagatcgagtccccg
ccgacgccgcctcccgcgccggcgcctgaagagcccgtggcgaaggcggctgcgaaggag
acaaagaaggacgaagtgccaccgccaaaagccaaggacgagaaggagaagaaggcgaag
aaggcggccaccacggcctccgggaagctgcagccgacgtcgctgcccgtcccaccaccc
gcgcacaagacccctgcgcctgcagcgacactcccgccgatccgatacgcggccgctgcc
gctgcggcggtggccaccacgccggcggcaggcgcgcccagcccgtccacggcggtgcct
gtgcctgcgtcggagaccgcggccgatacatcggcaacagacgtgcctgtcgaggcggag
ggcgacgtaagtgcggcgagcgccgacgcgagtggtgcggcacctgcgcggagcgatgcg
cggctgcccgacacgctttctgacctggtgacgtcgtttgaatgggcgaaacaaaaggcg
ctcctgcgcgactcgaacctgtcccatgtacagcgctcgctggacgcgagctacgcgggt
ggcgcgccggagcctgtggactcggagagcccgaagcactatgtgccgaaggacccgttc
ccgacgccgagctactacccgcagtcgcctgcgagcctctttgataatccggcgctctac
gccaagtttgacgtggacacactattttacatcttctactaccagcagggcacgtaccac
caatacctggctgcccgtgagttgaagaagcagtcgtggcgcttccacaagcaatacctc
acgtggttccagcggcattcggagccgcaggccatcacggacgagtacgagcagggcgcg
tacgtgtactttgactgggaaggctcgtggtgccagcggcgaaagaacgacttccgcttc
gagtaccgttggctggaggacaactag
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