KEGG   Malassezia sympodialis: MSY001_1536
Entry
MSY001_1536       CDS       T06541                                 
Name
(RefSeq) uncharacterized protein
  KO
K14962  COMPASS component SWD2
Organism
msym  Malassezia sympodialis
Pathway
msym03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:msym00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    MSY001_1536
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msym03019]
    MSY001_1536
   03036 Chromosome and associated proteins [BR:msym03036]
    MSY001_1536
Messenger RNA biogenesis [BR:msym03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     MSY001_1536
Chromosome and associated proteins [BR:msym03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     MSY001_1536
    COMPASS/SET1 complex (yeast)
     MSY001_1536
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_TEP1_C PQQ_2 WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_EIPR1 MIOS_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_RIG_2nd WD_LRWD1 DUF7385 WD40_RFWD3 DUF2272
Other DBs
NCBI-GeneID: 30056421
NCBI-ProteinID: XP_018740111
LinkDB
Position
Unknown
AA seq 368 aa
MSEADAEKPAQLALSLALVDSLKPAKVFKEFVQPDHKVTSLDYDDRGELCVTASDDETIQ
LYNCRSGKCAYQDALQQKVWRAPRALHAPVVGDRVCVDEGRRYVAAAHADTVRYHSLHDN
KYLQYFRGHKRTVVSLAMSPVDDTFLSAAVDDSVRLWDLRSPAAQGQLRVQGHPVVAYDP
SGLVFAVAINERSAVLLYDLRKFDQNPFLTITIDDTVALSQVTMPPRIPVITHLSFSQTG
QHLLAGTSGDVHYVLDAFSGKLLYRLVGHVGLERADGASIGLVASAGISGQELCWTPDGQ
MVIAGSANAQLCVWSIPASPPAAPVTLQPSAILNGQEGTPRVVAFNPRCAQLSTAGAQVA
FWLPDPAT
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagcgaggcggacgcggagaagccagcgcagctcgcgctgtcgctcgcgctcgtcgac
tcgctgaagcctgcgaaggtgttcaaggagttcgtgcagccggaccacaaggtgacgagt
ctggactacgacgatcgcggcgagctgtgcgtgacggcgtcggacgacgagacgatccag
ctgtacaactgccgcagcggcaagtgcgcatatcaagacgctctacagcaaaaagtatgg
cgtgcacctcgcgcgcttcacgcaccggtcgtcggcgatcgtgtatgcgtcgacgaagga
agacggtacgtggccgccgctcacgcagacacggtgcggtaccactcgctgcacgacaac
aagtatctgcagtacttccgcgggcacaagcgcacggtcgtctcgctcgccatgtcgccg
gtcgacgacacgttcctgtcggcggcggtcgacgactcggtgcggctatgggacctgcgc
agcccggcggcgcagggccagctgcgcgtgcagggccacccggtcgtggcgtacgacccc
agcggcctcgtatttgcggtggcgatcaacgagcggtcggcggtcctgctgtatgacctg
cgcaagtttgaccagaacccgttcctgacgatcacgatcgacgataccgtggcgctctcg
caggtgacgatgccgccacgcattcccgtcatcacacacctgagcttcagccagacgggc
cagcatctcctcgcaggcacatcgggcgacgtacactatgtgctcgatgccttctccggc
aagctgctgtaccgcctcgtgggccacgtcggcctcgagcgcgcggacggcgcatccatc
ggactcgtggcgtcggctggcatcagcggccaggagctctgctggacgcccgacggccag
atggtcattgccggctcggcgaacgcgcagctgtgtgtgtggtcgatcccggcgtcgcca
cccgcggcgcccgtgacactgcagccgagtgcgatcctgaatggccaggaaggcacgccg
cgcgtcgtggcattcaacccgcggtgcgcgcagctcagcacggccggtgcgcaggtcgcc
ttttggctgccggacccagcgacatag

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