KEGG   Malassezia sympodialis: MSY001_2287
Entry
MSY001_2287       CDS       T06541                                 
Name
(RefSeq) uncharacterized protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
msym  Malassezia sympodialis
Pathway
msym03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msym00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MSY001_2287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:msym03041]
    MSY001_2287
Spliceosome [BR:msym03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    MSY001_2287
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_EML WDR90_beta-prop_4th PRP4 Beta-prop_WDR41 Beta-prop_Aladin ANAPC4_WD40 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st WDR54 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_DCAF4 WD_LRWD1 Beta-prop_EIPR1 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 30057172
NCBI-ProteinID: XP_018740821
UniProt: M5EAE6
LinkDB
Position
Unknown
AA seq 496 aa
MADEAGIALDDLGTDLAPAPVSAGDAALHAMLEQRKLAHQVPVPTSDVQVRERLRQYGEP
MTLFGEREPDRRARLLQVLIARHGKNAVNLSHAPSAEAADEDEEEFYTEGSTDLLVARRR
IAMDSLSRAKARRAYQRREARVSMQDVAQLRKQVLEPLKTCQLLGSQIAGSRPISMVRFA
PDASILATGSWSGHAALWSLPNATARGAALAGHEDRISGLAWHPCATLTQTPSAVNLATG
AGDGTVCLWSLADERPLLRTLRGHEARVCRTAFHPMGDYLVSASYDGTWRLWDVERGLEL
LLQEGHSRAVYAIDVHGDGSLVASGGLDAIGRLWDTRTGRTAMVLDGHAREILSLAFAPN
GYHLLSASGDDTVRVWDLRTLSTVYTIPAHRSSVADVRFFTAASERPRAPAPWWAGSDVS
MDVDDAGDAPALRRSGLYFATAGYDGLVKLWSADDWQLVQSLRGDSGKVMSVDISADGQY
IASGEWGRTFKLWGSL
NT seq 1491 nt   +upstreamnt  +downstreamnt
atggcggacgaggcggggatcgccttggacgatctcggtacagacctggcgcccgcgccg
gtcagtgccggggatgcggcgctacatgctatgctggagcagcgcaaactcgcgcaccag
gtgccggtgcccacctctgacgtccaggtgcgcgagcgcctgcggcagtatggcgagcct
atgaccctgtttggcgagcgcgagccggaccggcgcgcgcgtcttttgcaggtgctgatc
gcgcgccacgggaaaaatgccgtgaacttgtcgcacgcgccgtccgccgaggcggcggac
gaggacgaggaggaattctacaccgagggctctactgacctcctcgtcgcgcggcggcgc
atcgcgatggactccctttcgcgcgccaaggcgcgccgcgcgtaccagcgccgcgaggcg
cgtgtgtcgatgcaggacgtcgcacagctccgcaaacaagtgctcgagcccctcaagacg
tgccagctgctcggctcgcagatcgccggatcgcggcccatctccatggtgcgctttgcg
ccagacgcgtccatcctggcgactggatcatggtctggccacgcggcgctgtggtcgctg
ccgaatgcgacggcccgcggcgcggcactcgcgggtcacgaggaccgcataagcggcctg
gcgtggcacccgtgcgccacactcacgcagacgccgagcgcggtgaaccttgcgacgggc
gcgggcgatggcaccgtgtgcctctggtcgctcgcggacgagcggcctctcctgcgcacg
ctgcgcggccacgaggcgcgtgtgtgtcgcacagcgttccacccgatgggtgactatctc
gtgagtgcctcgtacgacggaacgtggcgcctctgggacgtggagcgcgggctcgagctc
ctgctccaggaaggccacagccgcgcggtgtatgcgattgatgtccacggcgatggctcg
ctcgtagcgtcgggcggcctcgatgcgatcgggcgcctgtgggacacacgcaccgggcgc
acggccatggtgctcgatggccatgcgcgcgagatcctcagccttgccttcgcgccgaac
ggctaccacctgctctcggcgtccggcgacgatacggtgcgtgtgtgggatctgcgcacg
ctcagcaccgtctacacgattcctgcgcaccgctcgtccgtggcggatgtgcgcttcttc
accgcggcgagtgagcggccccgtgcaccggcgccctggtgggccggcagcgacgtgtcg
atggatgtggacgacgcaggcgatgcgccagcgctgcggcgctcaggcctctactttgcc
acggcggggtacgacgggctcgtcaagctgtggagtgccgacgactggcagctggtccag
tcgctgcgcggcgactcgggcaaggtgatgagcgtggacattagcgccgacgggcagtat
attgcgagtggcgagtgggggcgcacgttcaagctctgggggtcgctatag

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