KEGG   Malassezia sympodialis: MSY001_3181
Entry
MSY001_3181       CDS       T06541                                 
Name
(RefSeq) uncharacterized protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
msym  Malassezia sympodialis
Pathway
msym03013  Nucleocytoplasmic transport
msym03015  mRNA surveillance pathway
msym03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msym00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MSY001_3181
  09122 Translation
   03013 Nucleocytoplasmic transport
    MSY001_3181
   03015 mRNA surveillance pathway
    MSY001_3181
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msym03019]
    MSY001_3181
   03041 Spliceosome [BR:msym03041]
    MSY001_3181
   03009 Ribosome biogenesis [BR:msym03009]
    MSY001_3181
   03012 Translation factors [BR:msym03012]
    MSY001_3181
Enzymes [BR:msym01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     MSY001_3181
Messenger RNA biogenesis [BR:msym03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     MSY001_3181
   mRNA cycle factors
    Stress granule specific factors
     MSY001_3181
Spliceosome [BR:msym03041]
 Complex C
  Other components
   EJC/TREX
    MSY001_3181
Ribosome biogenesis [BR:msym03009]
 Eukaryotic type
  90S particles
   Helicases
    MSY001_3181
Translation factors [BR:msym03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    MSY001_3181
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 Cas3-like_C_2 UvrD-helicase AAA_22
Other DBs
NCBI-GeneID: 30058066
NCBI-ProteinID: XP_018741671
LinkDB
Position
Unknown
AA seq 385 aa
MAGVHSTSANLVFESSEEVTVAPTFCVHGANAADYEKPSAIQQRAIQPILRGRDVIAQAQ
SGTGKTATFSISMLQTIDTALRETQALVLSPTRELATQIQSVVLALGDYMNVQCHACIGG
TSVGEDIRKLEYGQHIVSGTPGRVFDMIRRRHLRTKNIKMLILDESDELLNMGFKDQIYD
IYRYLPPATQVVLVSATLPNDVLEMTSKFMTDPVRILVKRDEITLEGIKQFFIAVEKEDW
KFDTLCDLYDTLTITQAVIFCNTRRKVDWLTERMRENNFQVSSMHGEMQQKERDAIMNEF
RQGSSRVLITTDVWARGIDVQNVSLVTNYDLPTNRENYIHRIGRSGRFGRKGVAINFVTN
EDVKILRDIEQYYRFVGHTYAQHTN
NT seq 1158 nt   +upstreamnt  +downstreamnt
atggcgggcgttcactcgacgagtgcgaatcttgttttcgagagcagtgaggaggtcact
gtggcgccgaccttttgcgtgcatggcgctaacgccgcagactacgaaaagccctctgcc
atccagcagcgcgctattcagccgattctacgtggccgcgatgtgattgcacaggcgcag
tcgggtaccggcaagaccgccaccttctccatttccatgctgcagaccattgatacagca
ttgcgcgagacacaggcgctcgtgctcagtcctacgcgcgagcttgcgacgcagatccag
agcgtcgtgctggccctcggagactatatgaacgtgcagtgccacgcgtgcattggcggc
acgtctgtcggcgaggacatccgcaagctcgagtatggacagcatatcgtgtctggcacg
cccggccgcgtatttgacatgatccggcggcgacacctgcggacaaagaatatcaaaatg
ctgatcctcgacgagagcgacgagctcctaaacatgggctttaaggaccagatttacgac
atctaccgctacctgccgccggcgacgcaggttgtgctcgtctcagcgacattgccgaat
gatgtgctggagatgacaagcaagttcatgacagatcccgtgcgcatcctcgtgaagcgt
gatgaaattacgctcgagggcatcaaacagttcttcattgccgtggagaaggaggactgg
aagttcgacacgctgtgcgatctctacgacaccctgacgatcacacaggcggtcatattc
tgcaacacgcgcagaaaggtcgactggctcacggagcgcatgcgcgagaacaacttccag
gtgagcagcatgcacggcgagatgcagcagaaggagcgcgacgcgattatgaatgagttc
cgccagggcagcagtcgcgtgctcatcacgacggacgtctgggcccgcggcatcgacgtg
cagaacgtctcgctcgttaccaactacgacctgccgacgaaccgcgagaactacatccac
cgcattggccgctcagggcgctttggacgcaagggcgtagcgatcaacttcgtcacaaac
gaagacgtgaagatcttgcgcgacatcgagcagtactacaggttcgtcggccacacttac
gctcagcacacaaattga

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