Mesoplasma syrphidae: CXP39_03740
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Entry
CXP39_03740 CDS
T05255
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msyr
Mesoplasma syrphidae
Pathway
msyr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CXP39_03740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyr03021
]
CXP39_03740 (rpoC)
03400 DNA repair and recombination proteins [BR:
msyr03400
]
CXP39_03740 (rpoC)
Enzymes [BR:
msyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CXP39_03740 (rpoC)
Transcription machinery [BR:
msyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CXP39_03740 (rpoC)
DNA repair and recombination proteins [BR:
msyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CXP39_03740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AUF83877
UniProt:
A0A2K9C6G4
LinkDB
All DBs
Position
complement(865277..869035)
Genome browser
AA seq
1252 aa
AA seq
DB search
MEFNKKNKSIKIELASPETIRSWSHGEVKKPETINYKTLKAEREGLFDEKIFGPTKNFEC
SCGKYKKANPMNKGKICEKCGVELTESIVRRERMGHIELEEPVTHIWMLKVAPSRIAALL
DLKTKELEEVVYFVSHIVLEAGNSKYFKIKEVLDLGNTKATKTREKLGLALQEVMEIIND
ESLRDHRKVVRLLEELANPNIPFSIDEATALIAKYTEAKFGIGAEAVEYLLKAIDMPSEI
AILKQELKDKKVPADQTRIMKRLEVLEALKRSNQKPEWMVLHTIPVIPPDIRPIIQLDGG
RFTTSEINDLYRRIIIRNERLRKVKEMGAPSIIVNNEKRMLQEAVDALMDNERKPRPIQG
KDKRPLKSLTSVLKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGLPREMAIILFK
PFVIQWLQEHDFAENVKVAEKMIQQNDPKVWEALEKVIKDRPVLLNRAPTLHRLGIQAFE
PKLVKGKAIRLHPLVTTAFNADFDGDQMAVHVPITKEAIGEARALMLGSNAILGPKDGKA
IVTPGQDIILGNYYVTTEEKDVKGQGMMFATIGEAIRAYETKNISLNALIGIAVSALPAE
KFTDEQRQGYLLTTVGKILFNKIFNNEFPWINSPKINSAKEAVNEFIFDFGIDINEVIAK
TNIQQPIKKKELSLIIEKYFNEYGSRKTAEMLDNMKDLGFLFSTKSGTTISAGDVVAFTH
KYDEFQAADKKVAQITEFYHMGMLTANEKKRRVIEVWSAVKDNIQKELEKVLRQDVKNPV
FVMADSGARGNVSNFTQLVGMRGLMNDTKGDIKEIPIKSSFREGLTVSEYFVSTHGARKG
MADIALKTADSGYLTRRLVDVSQEIVVNNEDCQPNKGYSVSAIVDTKHDNIIVPLKDRLN
GRFSYENIEDENGNIIVPENTLITTELANAVTAAGIKTVLIRSVLTCDNKKGVCQRCYGR
NLATGQLVRIGEPVGVVAAQSIGEPGTQLTMRNFHTGGVAGNADITQGLPRIKELLDVTT
PKGSVAIISEISGVVTEVEDNEGIYTITVAGANEDVRKYKTHFNAVLRVEEGSVVRSGQK
LTEGAIDLHQLLEFSGIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKVMDS
GDSELLPGEIITIQAYKEAIADAIVNGKQPPLAKAQIFGIKKAPLESESWLSSASFQDTA
RVLTKAIIHGKEDKLEGLKENIMLGNLIPAGTGLTGAEEVMAIGEDYHKNEY
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaacaaaaaaaataagtcaattaaaattgaattagcaagtccagaaactatc
cgttcatgatcacacggggaagttaaaaagcctgaaacaattaactacaaaacattaaaa
gcagaacgtgaaggtttgtttgatgaaaaaatctttggaccaacaaaaaactttgaatgt
tcttgtggaaaatataaaaaagctaacccaatgaataagggaaaaatttgtgaaaaatgt
ggtgttgaactaactgaatcaattgttagacgtgaaagaatgggccatattgaattagaa
gaacctgttactcatatttgaatgttaaaagttgcgccttcaagaattgcggctttatta
gatttaaaaactaaagaattagaagaagttgtttactttgtttcacacattgttttagaa
gctggtaattcaaaatactttaaaataaaagaagttttagatctaggaaataccaaagct
actaaaactcgtgaaaaattgggattggcattacaagaagttatggaaattattaatgat
gaatcattaagagatcaccgtaaagtagttcgtctattagaagaactagcaaatccaaac
attcctttttcaatcgatgaagcaactgcattaattgcgaaatatacagaagcaaaattt
ggaattggagcagaagctgttgaatacttgctaaaagcaattgatatgccatcagaaatt
gcaattttgaaacaagagctaaaagataaaaaagttccagctgatcaaacaagaattatg
aaacgcctagaagttttagaagccttgaaacgttcaaatcaaaaacctgaatgaatggta
ttacatacaattccggttattccaccagatattcgtccaattattcaattggatggagga
cgtttcacaacttctgaaattaatgatttataccgtcgtattattattagaaatgaacgt
ttaagaaaagttaaagaaatgggagcgccatcaatcattgtaaacaacgaaaaacgtatg
ttgcaagaagctgttgatgctttaatggataatgagcgtaagcctcgtccaattcaagga
aaagataaacgtccgttaaaatcattaacttcagttttaaaaggaaaacaaggtcgcttc
cgtcaaaacctattaggtaaacgtgttgattattcaggacgttcagttattgctattggt
ccagatttaaaaatgtatcaagcaggtttaccaagagaaatggcaattattttatttaag
ccttttgtaattcaatgattacaagaacatgattttgctgaaaacgtaaaagtagctgaa
aagatgattcaacaaaatgatccaaaagtttgagaagctttggaaaaagttatcaaagat
cgcccagtattgttaaaccgtgcacccacacttcaccgtttaggaattcaagcttttgaa
cctaaattagttaagggaaaagcaattcgtcttcacccattagttactacagctttcaat
gccgatttcgatggagaccaaatggctgtccacgttccaattactaaagaagcaattggt
gaggcgcgtgcgttaatgttaggttcaaatgcaattttgggaccaaaagatggaaaagca
attgttactccaggtcaagatattattcttggaaattattatgtaacaactgaagaaaaa
gatgtcaaaggtcaaggaatgatgtttgctacaattggtgaagcaattagagcttatgaa
acaaaaaatattagtctaaatgctttaattggaattgctgtatcagcactaccagctgaa
aaatttactgatgaacaacgtcagggatatttattaacaacagttggtaaaattttattc
aacaaaatttttaataatgaattcccatgaattaactcaccaaaaattaattcagctaaa
gaagctgttaatgaatttatttttgattttggaattgatattaatgaagttattgccaaa
actaatatccaacagccaatcaagaaaaaagaattatcattgattattgaaaaatacttt
aatgaatatggttcaagaaaaacagcagaaatgttggacaacatgaaagatttgggattc
ttattttcaacaaaatctggaactacaatttcagctggagacgttgttgcctttactcat
aaatatgatgaatttcaagctgctgacaaaaaagttgctcaaattaccgaattctaccat
atgggaatgttaactgctaatgagaaaaaacgtcgcgtaattgaagtttgatctgcagtt
aaagataacattcaaaaagaattggaaaaagttttacgtcaagatgttaagaaccctgtt
ttcgtaatggctgattctggagctcgtggaaatgtatctaactttactcaacttgtagga
atgcgtggactgatgaacgatactaaaggggatattaaagaaattccaattaaatcatca
ttccgtgaaggactaacagtttctgaatacttcgtatcaactcacggagcgcgtaaggga
atggctgatattgctttaaaaactgccgattcaggttacttgactcgtcgtttagttgat
gtttcacaagaaattgttgttaataacgaggattgtcagccaaacaaaggatattcagta
tcagctattgttgatacaaaacatgacaatattattgttccgttgaaagaccgtttaaat
ggtcgcttcagttatgagaatattgaagatgaaaatggaaatataattgttccagaaaat
acgctaattacaactgaattggcaaatgcggttacagctgctggaattaaaactgtttta
attcgctcagttttaacatgtgacaataaaaaaggtgtttgtcaaagatgttacggacgt
aacttggcaactggtcaattggtacgaattggggagcctgtaggagttgttgctgcccaa
tcaattggggaacccggaacacaacttacaatgcgtaacttccatacggggggagttgct
ggtaatgcagatattactcaaggattaccacgtattaaagaattgcttgacgtaactacg
ccaaagggatctgttgcaattatttctgaaatttcgggagttgttacagaagttgaagac
aatgaaggaatttatacaataactgtagctggtgctaacgaagatgttagaaaatacaaa
actcactttaacgctgttttaagagttgaagaaggttctgttgtaagaagtggtcaaaaa
ctaactgaaggagcaattgatttacatcaattattggagttctcaggaatcgaagacgtt
caaaattacatcttaaaagaagttcaaaaggtttatcgattacaaggaattgaaatttca
gataaatatattgaaattattgttaagcaaatgttgaataaagttaaagtcatggattct
ggagattcagaattgctgcctggagaaattattacaattcaagcctataaagaagcaatt
gctgatgctattgtaaatggtaaacaaccgccattggctaaagcacaaatatttggtatt
aaaaaggcaccattagaatcagaatcatgattatcatctgcttcattccaagatactgct
cgagtattgacaaaggcaattattcacggaaaagaagataaacttgaaggtctgaaagaa
aacattatgttaggtaatttaattcctgctggaactggattaactggagctgaagaagta
atggctattggtgaagattaccataaaaatgaatattag
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