Methanosarcina siciliae HI350: MSSIH_0215
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Entry
MSSIH_0215 CDS
T03864
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msz
Methanosarcina siciliae HI350
Brite
KEGG Orthology (KO) [BR:
msz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msz03016
]
MSSIH_0215
Enzymes [BR:
msz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MSSIH_0215
Transfer RNA biogenesis [BR:
msz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MSSIH_0215
Prokaryotic type
tRNA splicing ligases
MSSIH_0215
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKB30905
UniProt:
A0A0E3P9Z2
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All DBs
Position
263372..264874
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AA seq
500 aa
AA seq
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MVENEDICTEESSMEGEHRDIRCMVRKLSDNNWEIPKGHIPNMRVPGRLFVSESLLDGIE
PGTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDTEEGIISPGGVGFDINCGV
RLIRTNLRKEDVVPEIKRLTDELFTNVPAGVGSKSRFRASDQELDGAFLEGAKWAVDAGY
GVEADVVHCEGNGYLEGADTAHVSTKARKRGKPQLGTLGSGNHFLEVQYVDEIYDREVAS
AFGLEEGQVTVMIHCGSRGAGHQICTDHLKELSQAVKKYGIEIPDKQLACAPAQSREAQN
YFKAMLCAANYAWANRQMITHWTRESFEKVFGRDVDDMGMSLLYDVAHNVAKLEDHNIEG
RKKEVYVHRKGATRAFPAGHPEVPAAYRDVGQPVLIPGSMGTPSFILCGAKDSMDVSFGS
ACHGAGRVMSRAHAKKEFHGQSVKENLEAHGITVRATHPSVIAEEAPGVYKSSSEVVNVV
HELGIARKVARVIPLGVAKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggtagagaatgaagacatctgtactgaggagtctagcatggaaggcgaacaccgggat
ataagatgtatggtccggaagctttccgataataactgggaaatcccgaaagggcatatc
cccaatatgagggttccagggcgcctgtttgtatccgaaagtttgcttgatggtatcgag
cccggtactatcgaccagattgcaaacgtggcaactcttcctggcattcagaaatattcc
atggcaatgcctgatgctcacctcggctatggttttgctatagggggcgttgcagctttt
gataccgaagagggaattatcagtccgggtggagtgggttttgacatcaactgcggggtt
cggctaatacgtacaaacctccggaaagaagatgtggttcctgaaatcaaaaggctgacc
gacgagctgtttaccaatgtgcctgccggagtcgggtcaaaaagccggttcagggcttct
gaccaggaactggacggtgcgtttcttgagggagcaaagtgggcagtagatgccgggtat
ggtgttgaagcggatgtggtacactgtgaggggaatggttacctggaaggagcagacact
gctcatgtaagtacaaaggcaaggaaacgcggaaaaccccagttagggactctcgggagc
ggcaaccatttccttgaagtccagtatgtggatgagatttatgaccgggaagtggcatcg
gcattcgggcttgaagaggggcaggttacggtcatgatccactgcgggtccagaggcgcc
gggcatcagatctgcactgaccacttaaaagaactctcccaggctgtgaagaaatacggg
attgaaatcccggacaagcagcttgcctgtgctccagctcagtccagggaagcccagaac
tatttcaaagctatgctctgcgctgcaaactatgcctgggctaacaggcagatgatcact
cactggacacgtgaatcttttgaaaaggtatttggcagggatgtcgatgacatgggaatg
agccttctgtatgacgttgctcacaacgtggcaaaactggaagaccataacattgaaggc
aggaaaaaagaggtttacgtgcacagaaaaggggcaacaagagcatttcctgccgggcat
ccggaagttccggccgcatacagggatgtgggacagccggttttaattcccggaagcatg
ggcacgccttctttcatactctgcggggcaaaagattctatggacgtttctttcggtagt
gcttgccacggagccgggagagttatgagcagagctcatgcaaagaaagagttccacgga
caaagtgtaaaagagaaccttgaagcccacggaatcactgtaagggcaactcacccctcc
gtaattgccgaagaggctcccggggtgtacaagtccagcagtgaggtggtaaatgtcgtg
cacgagcttggtattgcccgcaaggttgcaagagttatccctcttggggtcgcaaagggt
taa
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