Methanosarcina siciliae HI350: MSSIH_0496
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Entry
MSSIH_0496 CDS
T03864
Name
(GenBank) Putative Zn-dependent hydrolase in polyisoprenoid biosynthetic cluster
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
msz
Methanosarcina siciliae HI350
Pathway
msz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSIH_0496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msz03019
]
MSSIH_0496
Messenger RNA biogenesis [BR:
msz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSSIH_0496
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Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
AKB31186
UniProt:
A0A0E3LA06
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Position
594460..595803
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AA seq
447 aa
AA seq
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MTEIGIVAVGGYNEMGRNMTAIIIGEDIVILDMGLRLDRVQIHEDVEIDKMHSLELIEMG
AIPDDTIMKEINGTVRAIVCTHGHLDHIGAIPKLAHRYNAPILATPYTAAIIKQQIESER
KFEVCNRVIPLQAGGTYQVTEDVSIEFIRVQHSIIDCVLAAVHTPAGAVLYACDFKLDRT
PTMGEAPDFERFKSLGKEGVIAMITESTNAGRSGKTPSEQIAKDMVRDVLLGTEESDVGM
IITTFASHISRLKAIIEAAEEMGRIPVLMGRSMERYVGAARDIGYLELPSNVEIYGMRRD
VDRAFKRIMQDGKNKYLPIVTGHQGEPGSILVRVANGETPYTIEPGDKIIFSANVIPSPM
TQANRYALETKLKMKGGRIYDNVHVSGHAYREDHWELLRMVNPEHVIPAHGDMEMHGHYI
EMAEDAGYVLGDTVHLLRNGEVLYIEE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaataggtattgttgcagtcggcggttataacgaaatgggccgcaatatgact
gcaatcattattggtgaggatattgtcattctggatatggggctcaggcttgaccgggtt
caaattcatgaagatgttgaaattgacaagatgcattcccttgaactgatcgaaatgggg
gcaattcctgacgatactattatgaaagaaattaacgggactgtcagggcaattgtatgt
acccacgggcaccttgaccacataggtgcaatcccgaagcttgcccacaggtataatgcc
cccatacttgccaccccctataccgcagctattatcaaacagcagatagagtccgagcgc
aagttcgaggtctgcaacagggtcatccctttacaggcaggcggaacttaccaggttacg
gaagatgtctccatagaattcatccgggttcagcacagtattatcgactgtgtactcgca
gccgtgcacaccccggcaggagcagtcctttatgcctgtgatttcaagcttgacaggact
ccgacaatgggggaggctcctgactttgagcgtttcaagtccctcggaaaggaaggggtc
attgcaatgatcactgaaagcacaaacgccgggcgttcaggaaagactccttcggaacag
attgcaaaggacatggtcagggatgtactgcttgggaccgaagagtctgacgtgggcatg
ataattacgacttttgcatcgcatatttccaggctcaaagcaattatcgaggctgccgaa
gaaatgggtagaattccggtgcttatggggcgttccatggaacgctatgtgggtgctgcc
agggatatcggctaccttgaactcccctccaatgtggagatttacggcatgagaagagat
gtcgacagggcattcaagcgcatcatgcaggacggcaagaacaagtatctgcccattgtt
actgggcaccagggagaacctggctccattctcgtgagggttgcaaatggggaaacgcct
tacacaatcgaacccggagacaagatcattttctcagcaaacgtaatcccgagcccgatg
actcaggcaaaccgttatgctcttgagaccaaactcaagatgaagggcggtaggatctat
gacaacgtccatgtttcagggcatgcatacagggaagaccactgggagcttctgcgcatg
gtgaaccccgaacatgtaatccctgctcatggagatatggaaatgcacgggcactacatc
gagatggcggaagatgcgggttatgtactcggagataccgtacacctgctccgaaacggc
gaagtgttatatatagaagagtaa
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