Methanosarcina siciliae HI350: MSSIH_0500
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Entry
MSSIH_0500 CDS
T03864
Name
(GenBank) Transcription initiation factor B
KO
K03124
transcription initiation factor TFIIB
Organism
msz
Methanosarcina siciliae HI350
Pathway
msz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MSSIH_0500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msz03021
]
MSSIH_0500
Transcription machinery [BR:
msz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
MSSIH_0500
Prokaryotic type
Archaeal type
TFB
MSSIH_0500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cas12f1-like_TNB
Sigma70_r4
Zn_ribbon_SprT
Lar_restr_allev
Zn_ribbon_LysW
RPA_interact_C
Zn_ribbon_IS1595
Trm112p
DUF7577
HTH_AsnC-type
BRF2-like_C_cyclin_rpt
HTH_Tnp_ISL3
A2L_zn_ribbon
Zn_ribbon_PaaD
DUF7385
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
AKB31190
UniProt:
A0A0E3PCG6
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All DBs
Position
600469..601482
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AA seq
337 aa
AA seq
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MVEVERVRYSDTLEREKIRAMIKARKEKQKEQSFENEKAVCPECGSRNLVHDYERAELVC
GDCGLVIDADFVDEGPEWRAFDHDQRMKRSRVGAPMTYTIHDKGLSTMIDWRNRDSYGKS
ISSKNRAQLYRLRKWQRRIRVSNATERNLAFALSELDRMASALGLPRTVRETAAVVYRKA
VDKNLIRGRSIEGVAAAALYAACRQCSVPRTLDEIEEVSRVSRKEIGRTYRFISRELALK
LMPTSPIDYVPRFCSGLNLKGEVQSKSVEILRQASEKELTSGRGPTGVAAAAIYIASILC
GERRTQREVADVAGVTEVTIRNRYKELAEELDIEIIL
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggtagaagtcgaaagagttcgctattcggacactcttgaaagggaaaaaatacgtgcc
atgattaaagctcgcaaagaaaagcaaaaagagcaaagttttgagaacgaaaaggccgtg
tgtccagaatgcggtagcaggaaccttgttcacgattatgagagagctgagctcgtgtgt
ggggactgcggacttgtcatcgatgccgactttgtggatgaaggaccggaatggcgagct
ttcgatcatgatcagcgcatgaagcgttcccgtgtgggtgcgcccatgacatatacaata
cacgacaaagggctttccacaatgattgactggaggaaccgtgattcctacggaaagtct
atctcctccaaaaatcgtgctcagctttatcgtttaagaaaatggcagcgtagaattcgt
gtaagcaacgcaacggaaagaaacctggcttttgccctttccgaactggacagaatggct
tctgctcttggtctgccaagaactgtcagggagactgcagcagttgtctacagaaaagct
gttgacaagaaccttatccgtgggcgcagtattgaaggtgtagccgcagcggctctctat
gcagcctgccgccagtgcagtgtcccgaggacgcttgatgaaatcgaagaggtatcaagg
gttagcagaaaagaaatcggaaggacttaccgtttcatttccagagaacttgccttaaaa
ctcatgccaacttcccctatcgactatgtcccgaggttctgctcagggcttaacctgaaa
ggagaagtccagtcaaagagcgttgagattctcaggcaggcttccgaaaaagaactcaca
agcggaagagggcctacaggagttgccgcagctgcaatttacattgcatccattctctgt
ggggagcggaggactcagcgcgaagtcgcagatgttgccggggttacggaagttaccatc
aggaacaggtataaggagcttgcagaagagttggatatcgaaattatcctctaa
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