Methanosarcina siciliae HI350: MSSIH_0543
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Entry
MSSIH_0543 CDS
T03864
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
msz
Methanosarcina siciliae HI350
Brite
KEGG Orthology (KO) [BR:
msz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msz03016
]
MSSIH_0543
Enzymes [BR:
msz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
MSSIH_0543
Transfer RNA biogenesis [BR:
msz03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
MSSIH_0543
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Corona_NS2A
Motif
Other DBs
NCBI-ProteinID:
AKB31233
UniProt:
A0A0E3PAN3
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All DBs
Position
649825..650349
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AA seq
174 aa
AA seq
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MELDPSFREEIRQIQKKFSDFNLKFVNPEIVHITLKFLGDIEESKVKSLSAALDSLLCEP
FDAKIEGIGVFPKLSNPKVLWLGAKGNFKALHDDVETVLKPFKFKEDERAFTAHATLARV
KFLNKNQKNAFAGVLNELKDTKIGSIRVNKVLLKKSTLTPEGPIYETLHTVYLD
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
gtggaactggacccgagtttcagggaggaaatccgccagatccagaagaaattttccgat
tttaacctgaagtttgttaaccctgaaatcgttcacataaccctgaagtttctcggggat
atcgaggaatcaaaggttaaatccctttcagcagctcttgattctcttctttgtgagcct
tttgatgcaaaaattgaaggcatcggagttttcccaaagctgtcaaaccctaaagttctg
tggctgggggcaaaaggaaacttcaaggctcttcatgatgatgtggaaaccgtattgaag
ccttttaaattcaaagaggacgagagggcgtttactgcccatgctacccttgccagggta
aaattcctgaataaaaatcaaaaaaatgcttttgcaggtgtcctgaacgaattaaaagat
acaaaaattggaagcataagggtaaataaagtgcttctgaaaaaaagcactctaactccc
gaaggtcccatttatgagaccctgcatacggtatatctggactga
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