Methanosarcina siciliae HI350: MSSIH_1547
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Entry
MSSIH_1547 CDS
T03864
Name
(GenBank) Putative ski2-type helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
msz
Methanosarcina siciliae HI350
Brite
KEGG Orthology (KO) [BR:
msz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msz03019
]
MSSIH_1547
Messenger RNA biogenesis [BR:
msz03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
MSSIH_1547
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MGP3_C
Motif
Other DBs
NCBI-ProteinID:
AKB32237
LinkDB
All DBs
Position
complement(1932303..1934783)
Genome browser
AA seq
826 aa
AA seq
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MTLWVLGYAEKSKVVVMTIKDRMKQPLYMAELHIKDSYKGPRPHKIRVLTGKKNEEFIPP
QQFIELLRSANRIMLAEGGDPANEEAFLEMLRGFQLSADRVKICKYCWFNRRFNFVNSKS
IKYHDELICAECAKEELLRAVRSADSQYGEKSVDFLERVLHKTRDLDRTIRMLSPERLDP
EFTRYDTIRTSPTEATFRIKNLPLKKKFKEMLLQKSETLLPVQALSVEAGLLEGKNQFVV
SATATGKTLIGEMAGVQNLLDKKGKMLYLVPLVALANQKYDQFTERYSKLGLTSSIKIGA
ILIKTSQRVKMNTSPNADIIVGTYEGVDHMLRSGNADFLGKIGTVVIDEVHMLEDQERGH
RLDGLIGRLRYVAPEAQFIYLSATVANPEAYAKKLGARLVQYEHRPVPIDRHLLFCQENE
KAKLISQLAKEEYSMCSSKKHRGQTIVFTNSRRNCHKLAGTLSIRASPYHAGLSQYERKK
VETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYH
DRGVVVLMPVPGKSYSSAQSDTEEEVAIKLLQGEMLSVGVEYGEAEQLEEVLASVAVTSS
IQDLRNIHSLMFGVFDLDKLVSRLQSYRFLEKKGKKVSLTRFGKIIAAHFLPVSKAFLIR
DAVLAGNSPLKIVTNLEFFDAAYFKYANQIGSSLHVNMPSRVFQGAALDIIFDGESLSHL
DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGLDPTRIIRKLEDKYGI
SAYQGDVFGYLDNAVRNLDAVELIARVHSKKEAAEESKRLRKKVQG
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgacgctatgggtcctaggctatgccgaaaaatcaaaagttgtagtgatgaccataaag
gaccggatgaaacagccgctttatatggctgagcttcacataaaggacagttataaaggt
ccacgtcctcataaaatcagggttcttaccggtaaaaaaaatgaggaattcatccccccc
cagcagttcatagagcttttgcgcagtgcaaacaggattatgctcgcagaaggaggggac
cccgcaaatgaagaggcttttcttgaaatgctcaggggctttcagctcagtgcggatagg
gttaagatctgcaagtactgctggttcaaccgacgttttaattttgtgaacagcaagtct
atcaagtaccatgacgagctcatctgtgccgagtgtgcaaaagaagaattgctccgggca
gttcgttcggcagactctcagtatggagaaaaatcggttgattttcttgaacgagtcctc
cacaaaacaagagaccttgaccgtacaatccggatgctgagccctgagaggctggaccct
gaattcacgcgttatgacactatccggacaagccccaccgaagccacttttaggataaag
aacctcccccttaaaaagaagtttaaggaaatgctgctccagaaatccgaaaccctgctc
cctgtacaggctctatctgtggaagccggtcttctggaaggaaaaaaccagtttgtggtt
tccgcaaccgcaaccggaaaaactcttataggtgagatggcaggggttcagaacctgctg
gataaaaaaggaaaaatgctttacctggtcccccttgttgctcttgcaaaccagaaatat
gaccagtttacggaacgctattcaaagctagggcttacaagctccattaaaattggtgca
attcttataaagacctctcagcgcgtgaaaatgaatacaagtcctaatgcggatataatt
gtaggtacttatgaaggagtagaccacatgctccgctcgggaaatgccgattttcttggc
aaaatagggactgttgttatagacgaggtccatatgctcgaagaccaggaaagagggcac
aggctggacgggcttataggaaggcttcgttatgtggcgcctgaagcccagtttatctac
ctttccgcaaccgttgcaaaccctgaggcctatgcaaagaaactcggagcccgacttgtc
cagtatgaacacaggccggtccccatagacaggcatctccttttctgccaggaaaatgaa
aaggcaaaactgatttcccagcttgcaaaagaagaatattcgatgtgctcttcaaaaaag
cataggggacagacaatagtctttacgaattcaaggagaaactgccataagcttgcggga
accctttcaatccgggcttccccttaccatgcagggctttcgcagtatgaaagaaaaaaa
gtggaaaccctttttgcaaaaggagagcttccggtgatcgtgacaactgctgctcttgca
gccggggtggactttcccgcttcccaggttatattcgaatcccttgcaatgggaatagac
tggatttcggtccaggacttcctgcagatgagcggaagggcagggagacccgattatcat
gaccggggcgttgtcgtgctcatgcccgttccggggaagtcctattcaagtgcccagtcc
gataccgaagaagaggttgcaatcaagttactgcagggggaaatgctctctgtaggcgtt
gagtacggggaagctgaacagctggaagaggtcctggcctcggttgcagttacctcttcc
attcaggatttaaggaatatccattccctaatgttcggagtctttgatctcgataaactg
gtctcccggcttcagagctaccggttccttgagaaaaagggaaaaaaagtatcacttacc
cgtttcggaaagattattgcagctcatttcctgccggtctccaaagctttcctgattcga
gacgccgtgcttgcgggaaacagtccactgaaaattgtaaccaacctggagtttttcgat
gctgcctacttcaagtatgcaaatcagatcggaagctctctgcatgtgaacatgccttcg
agagtttttcagggtgcagctctcgatataatctttgacggggaatctctctcccatctg
gacatcaaaataagggaacttatgctgaactttgcctcggattttttaacctgtggctgc
cgggattctccttactgcggatgtgcagagcagaaattttcggagaagattatccggctg
aggatggaagggttggatcctacccggattatccgaaagcttgaggacaaatacggcatt
tccgcataccagggggatgttttcggatacctggataatgcggtacgtaacctcgatgct
gtggaactgattgcaagggtccattcgaaaaaggaagcagcagaagaatcaaagaggctc
aggaagaaagtccagggctga
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