KEGG   Methanosarcina siciliae HI350: MSSIH_2734
Entry
MSSIH_2734        CDS       T03864                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
msz  Methanosarcina siciliae HI350
Pathway
msz03030  DNA replication
msz03410  Base excision repair
msz03420  Nucleotide excision repair
msz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSSIH_2734
   03410 Base excision repair
    MSSIH_2734
   03420 Nucleotide excision repair
    MSSIH_2734
   03430 Mismatch repair
    MSSIH_2734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msz03032]
    MSSIH_2734
   03400 DNA repair and recombination proteins [BR:msz03400]
    MSSIH_2734
Enzymes [BR:msz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSSIH_2734
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSSIH_2734
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSSIH_2734
DNA replication proteins [BR:msz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSSIH_2734
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSSIH_2734
DNA repair and recombination proteins [BR:msz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSSIH_2734
   NER (nucleotide excision repair)
    Other NER factors
     MSSIH_2734
   MMR (mismatch excision repair)
    Other MMR factors
     MSSIH_2734
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKB33424
UniProt: A0A0E3PFD1
LinkDB
Position
complement(3494685..3496391)
AA seq 568 aa
MTSFREFAEICQAIEKISSTIETTNKVADLLKNVDVEELPLATHFIMSEVFPAWSGKQLG
IGTSLLYSSLSKASGMSIRSIESLIRTTGDIGETALLILKEKRKNQVTFSSFLEEQPELS
ITEVYQRFKTASEASGKGSQELKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVR
DAIARAFSVPADKVEHAFMVTNDLGIVAAAAKKDGIEALESLGIEINRPIKMMLSQISPD
IDADIREMKEAAIEWKFDGARVQIHKSGNSVTLFSRKLENVTNSLPDLVGIVRKHVKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LVERRKALESCVESSVEDSKSISVDEQAITGDLELVEKIYREALNAGHEGVMVKNPNSTY
SPGKRGKNWLKKKPLMETLDLVVVGAEWGYGRRANLIGSYSVACYDPETMRFMQVGKVGT
GLTDEQLKELTEMLSGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKAPEEADTIQRIGRVYGQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagcttcagggaatttgcagaaatctgccaggcgattgaaaagatatcgagcact
atagaaactacaaataaggttgccgaccttctcaaaaatgtcgacgtggaagaactgcct
cttgcaactcattttataatgagtgaggtttttcctgcctggagtggaaagcaactcggg
atcggcacaagcctgctgtatagttctctctccaaagcctccggaatgtctataagaagt
atagaatctcttatccggaccacaggagacataggggaaaccgcacttcttattttaaag
gagaaaaggaaaaatcaggtgacattttcttctttcctcgaggagcagccggaactttcg
ataactgaggtttaccagcggttcaaaacagcttcggaagcctctgggaaaggttctcag
gaactcaaaataaaaaaccttcagttcctctttaattcctcaactccaagggaagcaaag
tacatttccaggcttgcccttgaggaacttcgaattggggtaggagaaggcgttgtccgg
gatgcgattgccagagccttttccgtccctgcggataaggtagaacatgccttcatggtc
acaaatgatctggggatagttgctgcagctgccaagaaagacgggatagaagcccttgag
agtctggggatcgagataaatcgccccataaaaatgatgctctctcagatcagccctgat
atagatgccgatataagggaaatgaaggaagctgcaattgagtggaaattcgatggggca
agggttcagatccataagagcggaaattcggttactcttttttcccggaagcttgaaaac
gtcacaaattccctccctgaccttgtcggaatagtccggaaacatgtaaaagccgagtcc
gcaattcttgacggggaagccgtagctgtggatgaaaacggaaaacccagggcttttcag
gagatcctcaagcgttttcggcgcaagtacgatgtagaggaaaaagcgctcggaattcct
atccagctcaacctctttgacattatgtacctgaacggaaaaaccctgatcgatctcccc
cttgttgaacgacgaaaagctcttgaatcctgtgtggagagctcggttgaagactcaaag
tccatctccgtggacgagcaggcgataaccggagaccttgagcttgtggaaaagatctac
agggaagccttgaatgccggacatgaaggtgtcatggtcaaaaacccgaactcgacatat
tccccaggcaaacgcggcaaaaactggctgaagaaaaagcctcttatggaaacccttgac
cttgtggttgtgggagcagaatggggctacgggcgcagggcaaacctgataggttcatat
tcggttgcctgctatgaccctgagaccatgcgcttcatgcaggttggcaaggttggcaca
gggcttaccgatgagcagttgaaggaactcacggaaatgctctcaggcctgatggaaggc
ggagaagccggaggagtctttgcaataaggccaaaggttgtcctggaaatcgcttttgag
gaaatccagaaaagccccaactacgattcgggctttgccctgcgttttccccgttttatc
cgtatccgggacgataaagcccccgaagaagccgataccatccagcggattgggcgcgtc
tacggccagcagctgaaaagactttaa

DBGET integrated database retrieval system