Methanosarcina siciliae HI350: MSSIH_3229
Help
Entry
MSSIH_3229 CDS
T03864
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msz
Methanosarcina siciliae HI350
Pathway
msz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSSIH_3229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msz03019
]
MSSIH_3229
03009 Ribosome biogenesis [BR:
msz03009
]
MSSIH_3229
Enzymes [BR:
msz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MSSIH_3229
Messenger RNA biogenesis [BR:
msz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSSIH_3229
Ribosome biogenesis [BR:
msz03009
]
Prokaryotic type
rRNA helicases
MSSIH_3229
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
DUF4919
P-loop_SecA
HAUS5
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AKB33919
UniProt:
A0A0E3PHE3
LinkDB
All DBs
Position
4080035..4081702
Genome browser
AA seq
555 aa
AA seq
DB search
MEKLAKFKALGLSDSTLEALKKKGFEEPTPIQEKVIPLFLKGESDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGNKKLYIVPIYGGQSMNQQLRI
LKSGVDIVVGTPGRIIDHLGRKSLNLGNIKYFVLDEADEMLNMGFIDDIKEILKATGPDK
RMLFFSATMPKPILGIVKKYMQNYEHVTVEKEDLATKLTEQIYFEVKENDKFEALSRIID
IEDEFYGLVFCRTKTDTGQLAQKLSDRGYAADALHGDLSQQEREKILNKFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK
KTSKSEMKKGRIPEIKDVIKAKRARVKDELEETIKTEEYGDCLEMSERLLEEYPAEKILA
ALLKYTFKEKFDESMYTEISNTSSYVDRKGKTRLFIAMGKSDGMSPEKLSYFIQEELGDS
ELKVRDAEIFPHFSFVTLPFAQAEALLEIFKNKRRGRKPFVELAQKSKGRSQKGSNKGYS
NDRPRNPSRPRNTKK
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttgggctctcggacagtacattggaagccctc
aaaaagaaaggttttgaagaaccaacaccgattcaggaaaaagtcatccctctttttttg
aaaggagaatctgacattatagggcaggctcagacaggaacaggaaaaacaaccgctttc
ggagcccccattatagagaagatccctgaaaaatcagggcatgttcaggcaataatcctg
accccaacaagagaacttgcaattcaggtttcagaagagctcaattccataaaaggaaac
aaaaaactttatattgtacctatttacggcggacagtccatgaaccagcaactccgcata
ctgaagagcggagtggatatcgttgtagggacacccggaaggatcatcgaccatctggga
agaaaaagcctcaacctcggaaatatcaaatatttcgtacttgacgaagctgacgaaatg
ctgaacatgggcttcattgacgatataaaggaaatcttaaaggcaacaggccctgataaa
agaatgcttttcttttcagctacaatgccaaagccaatccttgggatcgtcaagaagtac
atgcagaactacgagcatgttacagttgagaaagaggaccttgcaacaaagttgaccgaa
cagatctacttcgaagttaaggaaaacgacaagtttgaagctctcagcagaatcatcgat
atagaagacgaattctatgggctcgttttctgccggacaaagactgacaccggccagctt
gcccagaaactcagcgacagaggctatgcagccgatgccctgcatggagacctctcccag
caagaacgtgaaaaaatcctgaataagttcaggaagcagaagataaatattcttgtcgca
accgatgttgcagcaagaggcattgatatcatggatctgacccatgtcattaactattcc
ctgccccaggaccctgagtcttatgtgcacaggataggaaggaccggaagggcgggcaaa
cagggaactgctatcacctttgttacatccacagagttcaggcggctcacttacataaaa
aagacctcaaagtccgaaatgaagaaaggccgcatccccgaaataaaagatgtaattaaa
gccaaaagggcgagagtaaaagacgaactcgaagagaccataaagacagaagaatacggg
gactgccttgaaatgagtgaaagactccttgaggaataccctgcggagaaaatcctagct
gccctcttaaagtacacgttcaaagaaaagttcgacgaaagcatgtatacggaaatttcc
aacaccagttcttatgtcgacaggaaaggcaaaaccagactcttcatagccatgggaaaa
tccgatggtatgagcccggaaaaactttcatactttattcaggaagaacttggtgacagc
gaacttaaagtaagggatgcagagattttccctcatttctcctttgtaaccctgcccttt
gcccaggctgaagctctgctcgaaatctttaaaaacaaaagaagaggcagaaaacccttt
gtggaacttgctcagaaatcaaagggaaggagtcaaaaaggttctaacaaaggatacagc
aatgacaggccaagaaatcccagcagaccaagaaatacgaaaaaatga
DBGET
integrated database retrieval system
