Methylocaldum szegediense: MSZNOR_0502
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Entry
MSZNOR_0502 CDS
T09668
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSZNOR_0502 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msze03019
]
MSZNOR_0502 (pnp)
03016 Transfer RNA biogenesis [BR:
msze03016
]
MSZNOR_0502 (pnp)
Enzymes [BR:
msze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MSZNOR_0502 (pnp)
Messenger RNA biogenesis [BR:
msze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MSZNOR_0502 (pnp)
Transfer RNA biogenesis [BR:
msze03016
]
Prokaryotic type
tRNA degradation factors
MSZNOR_0502 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
LPD15
Motif
Other DBs
NCBI-ProteinID:
CAI8742840
UniProt:
A0ABM9HWZ9
LinkDB
All DBs
Position
MSZNORmain:460095..462170
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AA seq
691 aa
AA seq
DB search
MNPIRKQFKYGEYLVTFETGEIARQTDAAVLVDMAGTVVLVTVVGEKEASPETDFFPLTV
NYQEKAYAAGRIPGGFFKREGRPSEKETLTARLIDRPIRPLFPEGFTNEVQVVATVLSLN
PEVDPDIPSMLGASAALVLSGMPFRGPIGAARVGHIDGQLVLSPPASALKKSKLDLVVAG
TEKAVLMVESEAAMLSEDVMLDAVLFGHEHMQVAIKAIHELAEIVGVTPWNWEPPVANEV
VYQAVKDWASDQLGEAYQIAEKLTRQQRLKEIRKATVEALTEDGKYTESAVRSALEKLES
DIVRWRILNESKRIDGRDLTTIRPIHIRTGVLPRTHGSALFTRGETQALVVATLGTGRDA
QLIDAIEGEYKESFMLHYNFPPFCVGEIGPIGAPKRREIGHGRLAKRGVQAVMPSPEEFP
YVIRVVSEITESNGSSSMASVCGTSLALMDAGVPTKAPVAGIAMGLIKEGDRFAVLSDIM
GDEDHLGDMDFKVAGSRDGITALQMDIKIDGITPEIMRQALAQAKEGRLHILEKMAEVLP
TPRKEMSDYAPRIMSFTIDPSKIRDVIGKGGATIRAITEETGASIDISDDGVVRVASVDK
EAGMEARRRIEAITAEVEVGKVYEGRVARLMDFGAFVTILPGKDGLVHISQISDERVEKV
SDKLAEGDVVKVKVLEIDRQGRVRLSMKAVD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccgattcggaaacagtttaagtacggcgaatatctggttacctttgaaaccgga
gaaattgcacgacaaacggacgccgccgtattggtggatatggcaggaacggtggtcctg
gtcactgtggtgggcgagaaagaggcgtcgcctgagacagacttcttcccattgaccgta
aattatcaggaaaaggcctatgcggcaggccgcattcccggcggatttttcaagcgtgaa
ggtcggccgagcgagaaggaaaccctaaccgcacgattgatcgaccggccaattcgcccg
ctttttccggagggattcaccaacgaggttcaggtcgtcgccacagttctttccttgaat
ccggaagttgatccagacattccttccatgttgggcgcttccgcagccctggtactttcc
ggcatgcctttccggggaccgattggcgcggcgcgcgtcggccacatcgatggccaactc
gtcctcagtcctcccgcctccgctctcaagaagtccaagcttgatctggtggtcgccggt
acggagaaggcggttctgatggtcgaatccgaagctgccatgctttcggaagacgtcatg
ctcgatgccgtgttgttcggccacgaacacatgcaggtagccatcaaggcgatccatgag
ctggccgagatcgtgggcgtaacgccttggaactgggagccgccggttgccaacgaggtt
gtgtatcaggccgtgaaggattgggcatcggaccaactcggtgaggcttatcaaatcgcg
gaaaagctgactcgccagcagaggctgaaggaaattcggaaggccaccgtcgaggctctg
acggaagacgggaaatacaccgaaagtgcggttcgaagcgctttggagaaactggaatcc
gatatcgtgcgctggcggattctgaatgaatccaaacgtatcgacggacgggatttgacg
actatacggccgattcatatacgtacgggcgtgttgccgcgcacacatggttccgcattg
ttcacccggggcgaaactcaggctttggtggtcgccactctgggtaccggacgcgatgcg
caattgatcgatgcaatcgaaggagaatataaggaatccttcatgctgcattataatttc
ccgcctttttgcgtgggagagatcggcccaatcggcgctcctaagcgacgcgaaatcggg
catgggagattagcgaagcgcggcgtgcaggcggtgatgccgagccctgaggagtttccg
tacgtcattcgagtggtctcggagattaccgaatccaatggatcgagttccatggcgtcg
gtttgcggaaccagcctggctctgatggatgcgggcgtaccaaccaaggcaccggtagcc
ggaatcgcgatggggttaatcaaggagggtgatcgtttcgcagtgctttcggacattatg
ggtgacgaggaccacctgggcgatatggacttcaaagttgccggttccagagatggcata
accgcgctgcaaatggatatcaaaatcgacgggatcaccccggagatcatgcggcaggca
ctcgcgcaggctaaagagggacgtctccatattctcgagaagatggctgaagtattgccg
acaccgcgcaaggagatgtcggattacgctccgcgcatcatgagctttaccatcgacccg
agtaagattcgcgatgtcatcggcaaaggtggggcaacgattcgcgccatcaccgaggaa
acgggcgcgagtatcgacatcagcgacgacggtgtcgtcagggtggcgtcggttgacaag
gaagccggaatggaagcacgccgtcgcatcgaggcgatcacggcggaagtcgaagtcgga
aaagtgtacgaagggcgcgtcgcacggctgatggattttggtgcattcgtgacgattctc
ccgggtaaggacggcttagtccacatctcccagatttcggacgagcgcgtagagaaggtc
agcgataagctggccgaaggcgatgtcgtcaaggtcaaggtcctcgaaatcgaccgtcaa
ggacgagttcgtctcagcatgaaggccgtcgattga
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