Methylocaldum szegediense: MSZNOR_1076
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Entry
MSZNOR_1076 CDS
T09668
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
msze
Methylocaldum szegediense
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
msze03016
]
MSZNOR_1076 (rtcB)
Enzymes [BR:
msze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MSZNOR_1076 (rtcB)
Transfer RNA biogenesis [BR:
msze03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MSZNOR_1076 (rtcB)
Prokaryotic type
tRNA splicing ligases
MSZNOR_1076 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CAI8773421
UniProt:
A0ABN8WZ45
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All DBs
Position
MSZNORmain:complement(996750..998180)
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AA seq
476 aa
AA seq
DB search
MDINRLTRLSEFAWRIEPVNGMRVPVIIYADEALISEMDEKVAEQAANVTKLPGIIGACY
AMPDAHWGYGFPIGGVAAFDALQGGVVSAGGVGFDISCGVRTLYTGLKREQIEPLKTVLA
DALYATVPVGVGSRGKIRLSPTEMDEMLTGGAEWAVKQGYGRPEDLERIEERGRMAGARP
EAVSSHAKERQRAEMGTLGSGNHYLEIQEVSEIYDPAIAAAFGLAQGDVVVTIHCGSRGL
GHQIGTDFLKRMQGAAAQYGIALPDRELACAPIESPVGQEYLGAMRAAINCALANRQIIT
HLTRKVFAEILPEARLDLLYDVSHNTCKVEEHLVQGRKKLVYVHRKGATRAFGPGHPDLP
MVFRETGQPVLIGGSMGTASYILAGTADSETLSFASACHGAGRAMSRHQAVRTWSGREVV
DQLAARGIIVRSPSWRGVAEEAPGAYKDVHDVVIAADRAGLARLVAQVKPIVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaatcgtttgacgcgtctatccgaattcgcttggcgcatcgaacccgtaaac
ggcatgcgagtgcccgtgatcatttacgccgatgaagccctgatcagcgagatggatgaa
aaggttgccgagcaggccgcgaacgttaccaagctgccgggcatcatcggcgcctgctac
gccatgccggacgcgcactggggttacggctttccaatcggcggcgtggccgcgttcgat
gccctacagggcggggtagtctcggccggcggcgtgggcttcgacatctcgtgcggagtc
agaacgctgtataccggcctcaaacgcgaacaaatcgagccgctcaaaaccgtgctcgcc
gacgccctctacgccaccgtaccggtcggcgtaggcagccggggcaagatccgcctcagt
ccaacggaaatggacgaaatgctgaccggcggtgccgaatgggcggttaagcaaggttat
ggccgcccagaagatctggaaagaatcgaagagcgcggccgcatggccggtgcaagaccg
gaggctgtttcctctcacgccaaggagcggcagcgggcggaaatggggactctgggttcc
ggcaatcattatctcgagatccaggaagtcagcgagatttacgatcccgccatcgccgcg
gctttcggcctcgcccaaggggacgtggtggtcacgatacattgcggttccagagggctg
ggacaccagatcggcaccgactttctcaagcgcatgcaaggggccgccgcccaatacggc
atcgcactgcccgaccgcgagctggcctgcgcgccgatcgagtcgccggtcggtcaggaa
tacctcggcgcgatgcgggcggcgatcaactgcgcgctggcgaaccggcagatcatcacc
catctgacgcgcaaggtgttcgcggaaatcctgccagaagcccggctggacctgctttac
gacgtctcgcacaacacctgcaaagtcgaagagcatctggtgcagggccgaaaaaaactg
gtctacgtgcatcggaaaggcgcaacccgcgctttcggaccaggtcacccggacttaccg
atggtgttccgcgaaacaggacaaccagtcttgattggcggttccatgggaacggcatcc
tatatccttgccggcaccgcggacagcgaaaccctatccttcgcctccgcctgtcacggc
gccgggcgcgccatgagccgacatcaggccgtgcggacttggagtggccgtgaggtggtt
gaccagctcgccgcacgaggcatcattgtgcgcagcccgtcttggcgcggagtcgccgag
gaagcgccgggcgcctacaaagatgtccacgacgtggtgatagctgcggatcgagccggg
ctcgcgcgtctggtcgcccaggtcaagccgattgtctgcatcaaaggatga
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