Methylocaldum szegediense: MSZNOR_1325
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Entry
MSZNOR_1325 CDS
T09668
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03030
DNA replication
msze03410
Base excision repair
msze03420
Nucleotide excision repair
msze03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSZNOR_1325 (polA)
03410 Base excision repair
MSZNOR_1325 (polA)
03420 Nucleotide excision repair
MSZNOR_1325 (polA)
03440 Homologous recombination
MSZNOR_1325 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msze03032
]
MSZNOR_1325 (polA)
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_1325 (polA)
Enzymes [BR:
msze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MSZNOR_1325 (polA)
DNA replication proteins [BR:
msze03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MSZNOR_1325 (polA)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MSZNOR_1325 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSZNOR_1325 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
HHH_5
PcfK
Motif
Other DBs
NCBI-ProteinID:
CAI8786647
LinkDB
All DBs
Position
MSZNORmain:complement(1256229..1258943)
Genome browser
AA seq
904 aa
AA seq
DB search
MPEPNEKRLVLVDGSSFLYRAFHALPPLNNSRGEPTGAVLGVANMLRKLIGEYETCHIAV
VFDAPGKTFRDDLFEHYKAHRPPMPDELRAQIQPLHDIIRALGLPLLIEPGVEADDVIGT
LTMKAVEQGYSVVISTGDKDMAQLVNDRVILENTMFDTRLDVEGVKTKFGVPPERIVDYL
ALVGDTSDNIPGIPKVGPKTAAKWLTQYGSLDAIVAHADEIGGKVGEHLRAHLDQIPLSR
QLATIKCDVELSIGPDDLKRAEPDHATLREILVRLEFNSWLRQMDGANTVEKPAAAAPQG
VTKGNYQTILSEDELERWLKKLEAADYFAFDTETTNLDYSRAEIVGLSFAVEPGEAVYVP
VAHDYPGAPAQLSRDYVLEKLRPLLEDPKRPKIGQNLKYDANVLANHGVSLTGIRHDTML
ESYVLNSTATRHDMDSLAELYLNHRTIHYEDVTGKGAKQIPFQQVSIESATEYAAEDADI
TLRLHHHLWPKLEAEASLKTLYESIEIPLLPVLSRMECTGVLVDAVKLAQHSRELEKRML
EIEQEACKAAGCQFNLGSPKQIQTILYDKLNLPVVKKTPTGQPSTDESVLQELAESFELP
RLILDYRSVAKLKSTYTDKLAEQINPRTGRVHTSYHQAVAATGRLSSSDPNLQNIPVRTE
EGRRIRQAFIAPPGRKILAADYSQIELRIMAHISGDASLRAAFHDNTDVHRFTAAEVFGV
PQAQVTPDQRRSAKAINFGLIYGMSAFGLGKQLGIPTSVAQRYIDLYFARYPDVKGYMER
TRDMAREKGYVETLFGRRLYIPEINSRNAQRRQYAERTAINAPMQGTAADIIKRAMIAVD
AWIQESRAPVCMIMQVHDELVFEVAEDYVDEAAREIGNRMCRAAQLAVPLVVDVGIGSNW
DEAH
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagccaaacgaaaaaagactcgtcctcgtcgacggttcctcgttcctctaccgc
gcgtttcacgccctaccgcctctcaataactcgcgaggtgaaccgaccggcgcggtacta
ggcgtcgccaatatgctgcgcaagctgatcggagagtatgagacttgccatatcgcggtc
gtattcgacgcgcccggaaaaacgttccgcgacgaccttttcgaacattacaaagcacat
agaccgccgatgccggatgaacttcgggcgcagattcagcctctgcacgacatcattcgg
gcgctggggctgcccttgctgatcgagccgggcgtagaggccgacgacgtcatcggaact
cttacgatgaaagcggtcgagcaagggtattcggtcgtcatttccaccggcgacaaggac
atggcgcaactggtcaacgaccgggtgatactggaaaacaccatgttcgacacccgcctc
gacgtcgagggcgtgaaaaccaagttcggcgtgccgcccgaacgcatcgtcgactatctg
gccttggtgggcgatacctcggacaacattcccggcattcccaaggtaggaccgaaaacc
gcggcaaaatggctgacccaatacggctcgctcgacgctatcgtcgcgcatgccgacgag
atcggcggcaaggtcggtgagcacctccgtgcccatctcgatcaaattcccctgtcgcgc
cagttggccaccattaaatgcgacgtggaactatcgatcggtccggacgatttgaagcga
gccgaacctgatcacgccacccttcgggaaatcctggtccgtctcgaattcaactcttgg
ctccggcagatggatggtgcgaataccgttgagaaaccggccgctgccgctcctcaaggg
gtaacgaaaggcaattatcaaacgatcttgagcgaggacgagctggagcgctggctcaag
aaactggaagccgcggactacttcgctttcgacaccgaaaccaccaacctagattacagc
cgagccgaaatcgtggggctctctttcgcggtggaaccgggcgaagcagtctacgtcccg
gtggctcacgactatcccggcgcgcccgcgcagctcagccgcgactatgttttggaaaag
cttcggcctttgctggaagatccgaagcgccctaagatcggacagaatctcaaatacgac
gccaacgttctcgccaatcacggcgtctcgctgaccggcatccgccacgacaccatgctg
gaatcctatgtgctcaacagcaccgccacccggcacgacatggactccctggccgaactc
tatctcaatcaccgcaccatccattacgaagacgtaaccggaaaaggcgcgaaacagatt
cctttccagcaggtcagcatcgaaagcgctaccgaatacgcggcggaagacgccgacatc
accctgcgtctgcaccatcacctttggcctaagcttgaggcggaagcttcgctcaaaacc
ctctacgaaagtatcgagattcccctgcttccggtcctgtcccgcatggaatgcaccggc
gttctggtggacgcggtcaagctggctcaacacagccgggaactcgaaaagcgcatgctg
gagatcgaacaggaagcctgcaaagcagccggctgccagttcaacctaggatcgcccaag
cagatccagaccatcctttatgacaagctgaacctgccggtcgtcaagaaaacaccgact
ggtcagccatccaccgacgaatcggtgctgcaggaactggccgaaagcttcgaattgcca
cggctgatcctagattaccgctccgttgccaaactcaagtccacctacaccgataagctc
gcggagcagatcaacccccgcaccgggcgcgtccatacctcgtatcatcaagccgtggcc
gccaccggacggctttcgtcctccgatcccaacctacagaacatcccggtgcgcaccgag
gaaggccgccgcatccgccaagccttcatcgccccccccggacgcaagatcctcgccgcc
gattattcacagatcgagctcaggatcatggcgcatatttcgggcgacgccagcctccgc
gccgccttccacgacaacaccgacgtccaccgcttcaccgccgccgaagtgttcggcgtg
ccgcaggcccaggtcacacccgaccagcgccgttccgccaaggcgatcaatttcggcctc
atctacggcatgtccgccttcggcctcggaaaacagctcggcattcccactagtgtcgcg
caacgctacatcgatctttatttcgcccgttatcccgacgtcaaaggttacatggaaaga
acccgcgatatggcgcgagaaaaaggctatgtggagaccttgttcggccgccgcctctac
attccggaaatcaactcccgcaacgcccagcgccgccagtatgcggagcgcaccgccatc
aatgccccgatgcaaggcaccgcggccgatatcatcaagcgcgccatgatcgcggtcgac
gcctggattcaggaatcccgcgccccggtgtgcatgatcatgcaagtacacgatgaactc
gtgttcgaagtggcagaggattatgtggacgaggctgcccgcgagatcggcaaccgcatg
tgccgcgcggctcagcttgcggtgcctttagtggtggatgtggggatcgggtcgaattgg
gatgaggcgcattga
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integrated database retrieval system
