Methylocaldum szegediense: MSZNOR_3486
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Entry
MSZNOR_3486 CDS
T09668
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSZNOR_3486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msze03019
]
MSZNOR_3486
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_3486
Enzymes [BR:
msze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSZNOR_3486
Messenger RNA biogenesis [BR:
msze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSZNOR_3486
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSZNOR_3486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
UvrD_C
Helicase_C
UvrD_C_2
Viral_helicase1
ResIII
AAA_12
Motif
Other DBs
NCBI-ProteinID:
CAI8903198
LinkDB
All DBs
Position
MSZNORmain:3381431..3386587
Genome browser
AA seq
1718 aa
AA seq
DB search
MTQQSPKTVFRPKALCLDIETTVGAEVKLTKIGAWRADTGQHVHFQGSFSTAELRAELAR
LSAGAAFLLGHNIAGHDLPVLKSLFADLALLRLPVVDTLWLSPLAFPQNPYHSLVKDYKL
IKDSGNDPLKDAQLSFRLFEDEMEAFEQLQVQSPEELACYHYLLAGVTESDYDRLFSVVR
GAPKPRLEEVRRFLLNLAGPKVCSTRLRQLLTEDLDQAESHLPLAYVLAWLRVSGGNSVL
PPWVLYQIPRTRELIRELRDTACGRSDCAYCSRYHDVRAELERFFNFPAFRAEPRSAAGG
SLQEDIVKAGMAREHLLAILPTGGGKSLCYQLPALSRYWRDGSLTVIVSPLQSLMKDQVD
NLIRQGIFCGAALNALLSMPERKDVLEKIRLGDIGILLVSPEQFRNRGFTEAIKHRQIGA
WVFDEAHCLSKWGHDFRTDYLYVSRFIREHYGDPLAPINCFTATAKLDVIHDLASHFREV
LGITLRHFEGGHERTNLHFEVLPVKKAEKFPLIHTLLEKELKDAQGGAVVFTARRASAEE
IAGFLKDMGWVCSYFHAGLDPGLKKDVQKAFIDGALRVIVATNAFGMGVDKPDVRLVIHA
EIPGSLENYLQEAGRAGRDRDDARCVLLYDEEDVETQFSLAARSRLSRQDIAEILRVLRR
RSKRIKSEQVVVTAGEILTEDAVETAIEVESPDADTKVKTAIAWLERRRFLERNENHTRV
FPASLKVASLDEVEKRLRKANLSEEVRKKYLNLVALILNADADEGISTDTLMVESGLSSD
ECIRTLHQLEELQVLSNDIGMTVLLRKGVKDSSQDRLQRVTRLEAGLLELLPELAPDADQ
GDWQDMHLRQLCQELRRRTECELLPDELLTLLRTMSRAFGESQAMRAMFEVRVVKRDYLR
VRLRRSWAQIREIAAKRRDIAQSLLLHFLGRLPSDIKGVDLRVECRMGELTQVLKDDRVL
AGRLRNVTAALEQGLLYLHDNHVLILDRGRTVFRSAMTLRLLPEEAKRRFVQSDYEPLWE
HYREKNFQVHVIQEYARKGLSKLGDALAYVAAYFSWPKTRFIREYFANRREILDLATTEE
SYRRIVAELRHPVQERLVSEKTDVNRLILAGPGSGKTRVIVHRVAYLLRVSRVPPDSVIV
LTFNRAAAYEVRRRLHALVGNDAYGVTVLTYHALALRLTGTSLAVAAEAGQEIVFDDILQ
RAIDLLEGNAEIGDDPDELRERLLRGYRFVLVDEYQDIDALQYRLIGALTGRTLKDRDAK
LTIMAVGDDDQNIYAFRQTNVEFIRRFAADYEAETEYLIENYRSTAHIISAANAVIEGSP
DRLKADYPIRIDHARRNQPSGGRWERLDPVAKGRVHILEVPPDRNRETQVAMRELERLKA
LAPNADWSDFAVLGRTHASLEPVRAYCEWAGIPYRIAETHRFGQPELHQTREGRTLIQLL
RAHKRKLVRNGALREWLRKRFGRSADNPWLKLLEHCVLELEDAWRGTPIPVGQALDWIYE
YGSESRHQAAGRITLSTVHAAKGREFKHVLILDGSDWRNGELSEERRLYYVAMTRARETL
TLCEASARPNPFSRELASDEFLVRTLLKQLPAHRDALDKRYIQLGLADVDLGFAGRKHAV
DPVHRAIAMLNVGDPLQTVQLDGRWVLKDRRGLIVGRLAQKFKMPAGEIEEVRISAIVQR
SKQQCRGTEWESRCQVDNWEVVLCQILIRPECTQRLAV
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaacagtctccaaaaactgtcttccgacccaaagccctttgcctcgacatcgaa
accacggtcggcgccgaggtcaagctgaccaagatcggcgcgtggcgcgcggataccggt
cagcatgtccattttcaaggctcgttttcgaccgccgagctgcgggcggagttggctcgg
ctgagcgcgggcgcggcgttcctgctgggccacaacatcgccgggcacgatttgccggtt
ctgaaatcgctctttgccgatctcgcgctgttgaggcttcccgtcgtcgacacgctctgg
ctttcgccgctcgctttcccgcagaacccgtatcacagcctggtcaaggactacaagctc
atcaaggattccgggaacgatccgctcaaggacgcccagttgagttttcggctgttcgag
gacgaaatggaagcgttcgagcaactccaagtacagagccccgaggagctcgcctgttac
cattatctgctggctggggttacggaatccgattacgaccgcctgttttccgtcgtgaga
ggagcgccgaaaccgcggctcgaagaggtacgccgctttcttctgaacctcgccggcccc
aaagtttgttccacgcgccttcggcagctgctcaccgaagatctcgatcaggccgagagt
cacctgcctttggcctatgttctcgcctggttgcgcgtatcgggcggcaattccgttctg
ccgccttgggtcttgtatcagattcccagaacccgtgaactcatccgggaacttagagac
acggcttgcggccgaagcgactgcgcgtattgcagccggtatcacgatgtgagggccgaa
ctcgaacgcttcttcaacttcccggccttccgagccgaaccccgaagtgccgccggtgga
tcgctgcaggaagacatcgtgaaggctggcatggcgcgggaacacctgctcgcgattctg
ccgaccggcggcggcaaatccctctgttaccagcttcccgctctgtcgaggtactggcgc
gacggcagcctcaccgtcatcgtctcgccgctccagtccctgatgaaggatcaggtcgac
aacctgatcaggcagggcatcttttgcggcgccgccctgaacgccttgctgtccatgccc
gagcgcaaggatgtcctggaaaagattcggctcggggacatcggcatactcctggtgtcg
cccgaacagttccgaaaccgcggtttcacggaggcgatcaagcaccggcagatcggcgcc
tgggtgttcgacgaggcccactgcctctcgaaatgggggcacgatttccggacggattat
ctctacgtctcccgcttcatccgcgagcattacggggatccgctggcgcccatcaactgc
ttcacggccaccgcgaaattggacgtcatacacgatcttgcatcgcattttcgcgaggtc
ctcggcattacgctgcggcacttcgaaggcgggcacgagcgcacgaacctccatttcgaa
gtcctgccggtcaagaaggccgagaaatttccgttgatccacaccttgctcgaaaaagaa
ctcaaagacgcgcagggtggggccgtggtgttcaccgccaggcgcgccagcgcggaagaa
atcgccggctttctgaaggacatgggctgggtgtgctcctattttcatgcggggcttgat
cccggtctcaagaaagacgtccagaaagccttcatcgacggcgcgctgcgcgtgatcgtc
gctaccaacgcctttggcatgggcgtcgacaagccggacgtccgattggtgatccatgcg
gaaataccgggctccctggaaaactacctgcaggaagcggggcgcgcgggacgggaccgg
gacgacgcccgctgtgttcttctctatgacgaagaagatgtcgagactcagttttccctg
gccgcccgctcgcgcctgagccggcaggacatcgccgaaatcctcagggtcttgcgccgg
cgctcgaagcggatcaaatcggaacaggtggtggtgacggcgggcgagatcctgaccgag
gatgccgtagagaccgcgatcgaggtggagagcccggacgccgacaccaaggtgaagacc
gccatcgcctggctggagcgccgccggtttctcgagcggaatgaaaaccatacgcgcgtc
ttcccggcaagtctgaaagtcgcctccctcgacgaggtcgaaaaacggctgcgtaaggcc
aatctctcagaagaggttcggaagaaatacctgaatctggttgcactcatcctgaacgcc
gacgcggacgaaggcatcagcaccgatacgctgatggtcgagagcgggctttcaagcgac
gagtgcatacggaccctccatcaattggaagaattgcaggtcctatcgaacgatatcggc
atgacggtgctgctgcggaaaggcgtgaaggattcgtcccaggatcgattgcagcgtgtg
acccgactggaggccggactcctggaactgctgccggagctcgcgcctgacgcggatcag
ggcgactggcaggacatgcacctgcgccaactgtgccaggaattgagacggcgcacggaa
tgcgagctgctgccggacgagcttctgaccctgctgcggaccatgagccgagctttcggc
gagtcgcaggcgatgcgcgccatgttcgaggtgcgcgtggtgaaacgggattatctccgc
gtccggctccggcggtcttgggcgcagattcgggagatcgccgcgaagcgccgggatatc
gcccaaagcctgctgctacattttctcggccgccttccgtcggacatcaagggcgtcgat
ctccgggtcgaatgccgaatgggcgaactaacccaggtgctcaaagacgaccgggttttg
gccggacgcctcaggaacgtcaccgccgcgctggagcaggggctgctctatctccacgac
aatcacgtgctgatcctcgatcgcggcaggacggtgttccgctccgcgatgaccctacgc
ctgcttccggaagaagcgaagcgccgcttcgtgcaaagtgattacgagccgctttgggag
cattaccgggaaaagaacttccaggttcacgtgatccaggagtacgcccgcaagggactc
tcaaaactcggcgatgcgctcgcctacgtggcggcctatttcagctggcccaagacgcgc
ttcatccgggaatatttcgcgaaccggcgggagatcctggacctcgcgaccacggaagag
tcctatcgccgcatcgtcgccgaacttcggcatcccgttcaggaacgcctggtatcggaa
aagaccgatgtcaaccgcctgatcctggccggccccggttccggcaagacccgggtgatc
gtccaccgggtcgcctatttgctgcgcgtgtcgagagtcccgccggacagcgtcatcgtc
ctgaccttcaaccgggccgccgcctacgaggtccgccgccggcttcacgctctggttggc
aatgatgcctacggcgtcaccgtgctgacctaccacgcgctcgcgctgcggttgaccggc
accagcctggccgtcgccgccgaggcggggcaggagatcgtgttcgacgacattttgcag
agggccatcgatctcctggaaggaaacgcggagatcggcgacgacccggacgaattgcgg
gagcgcctgctgcgcggttatcggttcgtcctggtcgacgagtaccaggacatcgacgcg
ctccaataccggctgatcggtgccctgaccggccggaccctcaaggaccgggacgcgaag
ctgaccatcatggcggtcggtgacgacgatcagaacatctacgccttccgccaaaccaat
gtcgaattcattcgccgcttcgccgccgattacgaggccgagaccgaatatctcatcgaa
aactaccgctcgaccgcacacatcatctcggccgcgaacgccgtcatcgaggggagtccc
gatcggctgaaagccgattaccccatccggatcgaccacgcgcgccgcaaccagccgagc
ggcggacgttgggaacggttagatccggtggcgaaaggcagggttcatatactcgaagtt
ccgccggatcgaaatcgggaaacccaggtggcgatgcgcgagctagaacgcttgaaggcg
ctggctccgaacgccgattggtccgatttcgcggtcctcggccgcacccatgcctccctg
gaaccggtccgggcctattgcgagtgggccgggattccgtatcggatcgccgaaacgcac
cgcttcggccagccggaactgcatcagacgcgcgaaggtagaaccctcattcagcttttg
cgcgcgcataaacgcaaacttgtgcggaatggggccttacgcgaatggctccgaaaacgc
ttcggtcggtcggcggacaacccttggctgaagctgctggaacattgcgttctggaactc
gaagatgcctggcgtgggacgccgatcccggttggccaggctttggactggatctacgaa
tacggcagcgaatcccgccaccaggcggcggggcgcatcaccctgtccaccgtccatgcg
gcaaaagggcgggagttcaagcatgttctcatcctcgacggaagtgattggcggaatggt
gagctgagcgaagaacgtcgtctctactacgtcgccatgacccgcgcacgagaaaccctg
acgctgtgcgaagcgagcgcgaggccgaatcccttttcccgagaattggcgagtgacgaa
tttctcgtgagaacgctgctaaagcagcttcccgcacatcgcgacgctttggacaaacgt
tatattcagctgggcttggcggacgtggacctgggttttgccggtcgcaagcacgctgtc
gacccggtgcaccgcgccatagctatgctcaacgtcggggatccgctccaaacggttcag
ctggacggccgctgggtcttgaaggatcgtcggggcctgattgtcggacgcttggcacaa
aagttcaaaatgcccgccggcgagatcgaagaggtacgcatcagcgccatcgtgcaacgg
agcaaacagcaatgccggggaaccgaatgggaaagccgttgtcaggtcgataactgggaa
gtggtcctttgccagattttaatccggcccgagtgcacgcagagactcgccgtgtga
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