Methylocaldum szegediense: MSZNOR_3516
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Entry
MSZNOR_3516 CDS
T09668
Symbol
uvrB
Name
(GenBank) excision nuclease subunit B
KO
K03702
excinuclease ABC subunit B
Organism
msze
Methylocaldum szegediense
Pathway
msze03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSZNOR_3516 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_3516 (uvrB)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSZNOR_3516 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSZNOR_3516 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
Kinesin
Motif
Other DBs
NCBI-ProteinID:
CAI8904698
UniProt:
A0ABM9I5G4
LinkDB
All DBs
Position
MSZNORmain:3415347..3417413
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AA seq
688 aa
AA seq
DB search
MPQKMILDETLPLHPTKGKSFKLHSQFKPSGDQPEAIRQLVEGLGDGLLHQTLLGVTGSG
KTFTIANVIQAVQRPTLILAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPA
SDTYIEKDASLNEHIEQMRLSATKALIERRDTIIVATVSSIYGLGEPASYFSMVLHLVRG
DMIDQRTILRRLAELQYTRNETELRRATYRVRGDVIDVFPAESEKEALRIELFDDEIERL
SLFDPLTGEIIARIARYTVYPKTHYVTPREKILDAVDQIKADLKVRLEELRSMNKLVEAQ
RLEQRTLFDLEIMLEVGYCSGIENYSRYLSGRAPGEPPPTLFDYLPADALLVIDESHVTI
PQLGAMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFEARAPQRIYISATPGPYELKHS
GAVIEQVVRPTGLVDPEVEVRPALNQVEDLLSEIRERIARNERVLVTTLTKRMAEDLTEY
LFEHDIAVRYLHSDVDTVERVEIIRDLRLGKFDVLVGINLLREGLDIPEVSLVAILDADK
EGFLRSTVSLIQTIGRAARNLHGKAILYADTVTGSIQRAIDETERRRAKQIAYNKRTGLT
PTGISKRVTDILEVPVPGALQTGTGKKKLAKVAEQGADYRAVKPAEAAKLIKQLEERMYA
HARELEFEEAARLRDEIRRIQAEVFAGT
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaaaaatgatactcgatgaaaccttgcccctgcatcccaccaaggggaaaagt
ttcaaacttcacagtcaattcaagccgtctggcgatcagccggaagcgatccggcaattg
gtcgaaggtcttggcgacggcttgttacaccagactcttttgggtgtcactggttccgga
aaaaccttcaccatcgccaatgtcattcaagccgtgcagcgtccgacgctgatcctggcg
ccgaacaagacgttggcggctcagctttacggcgagatgaaggaatttttcccggaaaac
gccgttgaatacttcgtgtcgtattacgactactatcagcctgaggcgtacgtcccggct
tccgacacctatatcgagaaagatgcctcgctcaacgagcatatcgagcagatgcgcctt
tcggccaccaaggccctgatcgagcggcgcgacactatcatcgtggcgaccgtctcctcc
atctacggtttgggcgaacccgcttcctatttcagcatggtgctgcatctggtgcgcgga
gacatgatcgatcaacggacgatactgcgccggctcgccgaattgcagtacacgcgtaac
gaaacggagctccgccgcgctacctatcgtgtgcggggcgacgtgatcgacgtgttcccg
gcagaatctgaaaaagaggcgctacgcatcgaattattcgacgacgagatcgaacggcta
tcactattcgatcctttgaccggcgaaatcatcgcccgcatcgcccgctacaccgtttat
cccaagacccattacgtcaccccgcgggaaaaaatcttggacgcggtggaccagattaag
gccgatctcaaggtccggctggaagagctacggtccatgaataagctggtggaagcccag
cggttggagcagcgcacgctctttgatctcgagatcatgctggaggtcggctattgttcc
ggcatcgagaactattcccgctatctgtcagggcgcgccccgggcgaacccccacccacc
ctgttcgattatctcccggccgatgccttgttggtgatcgatgaaagccacgttaccatt
ccacagctaggcgccatgtaccggggcgaccgctctcgtaaggagactctagtggagtat
ggtttccgtctgccgtcggcgctggacaaccgcccgctcagattcgaggagttcgaagct
cgtgcgccgcaacgcatctacatttcggcaacgccggggccgtacgaactcaagcattcc
ggagcggtcatcgagcaggtggtacgaccgaccggcctggtggaccctgaagtcgaggtt
cgcccagccttgaaccaggtggaagacctcctttcggaaattcgcgagcgcatcgcccgc
aacgagcgggtattggtcacgacgctgaccaagcgcatggcggaggatttgaccgaatac
ctgttcgagcacgatatcgcggtgcgttacttgcattccgacgtggataccgtggagcgg
gttgagatcattcgtgatttgcgcctaggcaagttcgacgtactagtgggtatcaatctt
ctgcgggaaggcttggacattccagaagtctcgctggttgccatcctcgatgccgacaag
gaggggttcctgcggtcgaccgtatctttgattcagaccatcggccgagccgcgcgaaat
cttcacggcaaggcgattctctatgcggacacggtgaccggttcgattcaacgggcaatt
gacgaaaccgagcgccggcgtgccaagcagatcgcctacaacaaacggaccggtctaacc
ccgacaggcatttcgaaacgcgtgacggacatcttggaagtaccggttccgggggcattg
cagacgggtaccggcaagaagaaactagccaaggtggcggagcagggggccgactaccgc
gcggtgaaaccggccgaagcggccaagctgatcaaacaactcgaagaaaggatgtacgcc
catgcccgcgaactcgaattcgaagaagcggcgaggctgcgcgacgaaattcgccggatt
caggcggaagtctttgccggaacatag
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