Methylocaldum szegediense: MSZNOR_3557
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Entry
MSZNOR_3557 CDS
T09668
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSZNOR_3557 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msze03019
]
MSZNOR_3557 (rne)
03009 Ribosome biogenesis [BR:
msze03009
]
MSZNOR_3557 (rne)
Enzymes [BR:
msze01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSZNOR_3557 (rne)
Messenger RNA biogenesis [BR:
msze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSZNOR_3557 (rne)
Ribosome biogenesis [BR:
msze03009
]
Prokaryotic type
rRNA processing factors
MSZNOR_3557 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CAI8906921
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All DBs
Position
MSZNORmain:complement(3459201..3461792)
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AA seq
863 aa
AA seq
DB search
MRRMLINATQPEELRVALVDGQKLYDFDIEIPSKEQKKANIYKGIITRIEPSLEAAFVNY
GAERHGFLPFKEITPNYFGHAVDEEFSRRDIKDLIKEGQEVIVQVEKEERGSKGAALTTY
ISLAGSYLVLMPNNPRAGGISRRIEGDIRSDMREVMSQLEIPEGMGLIVRTAGGGKSAEE
LQWDLNYLLQLWEAIDRSAKEKPAPFLIFQESNVIIRALRDHLRSDIDEILIDDVGTFKL
VRSFLQQVMPQFIQKAKLYQDPVPLFSRYQIESQIETAYSREVPLPSGGAIVIDHSEALT
AIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMAARNQRAVE
NRLREAIKADRARVQIGRISRFGLLEMSRQRLRPSLGESSLLTCPRCNGQGSVRSVQSLA
LSVLRIIEEEAMKKNTEKVIAHLPIDSATYLLNEKRSAIADIEKRHQVSVIVVPSKHLET
PAYEIQRVRSTGTEEESDRKPSYQMFRSAEPELPRFTRESASVSPEPAVKEFLPTHPAPI
SGASKQAAGGFIKRFWSILTGSKIDEETERASQKPRSTSLQAAQPQPYRPAEVKERQHFI
GGEILEPREPETRTIVPEKQESSNGDNRIRDQSRRAGSRRRRSRRGESGLARDGQPSQSR
DFVPERAEEDLLRMEESLTISHESTNEESPQAIMAVPTPSDETSTVDELTGTSHEREENS
EAPIIYLPRSIAPEENLAEREDARSIHMPAIGTVELESVSENKEEIEAENSNPEVRKSPR
RSLARRRGRGRRDRRFGVKRIESGEGLEDATAPQDDHHETSENLSATDDNRYSDGYQPTE
ESRTTATVIVPDNSSVENGTELD
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaatgttaatcaacgctacccaacccgaggaacttcgggttgctctggtagac
ggacaaaaactttacgattttgatatagaaattccttccaaagaacagaagaaagccaat
atctacaaaggtatcatcacacgaatcgaacccagtctcgaggcagctttcgtcaattac
ggcgcggagcgtcacggctttttgccattcaaagaaatcacaccaaattatttcggtcac
gccgtggatgaggagttctcccggcgcgatatcaaggatttaatcaaggaaggtcaggaa
gtcattgttcaggtcgagaaggaggagcgcggaagcaaaggcgcggcattaacaacgtat
atcagtttggctgggagttacttggtcctgatgccaaataacccgcgtgccggcggcatt
tctcgacgtatcgagggcgacattcggtctgacatgcgagaggtcatgagccagctcgaa
attccggaagggatgggactgattgttcgaaccgctggcggcggtaaatcggccgaagag
ctgcaatgggatctcaattatctcttgcaactttgggaggcaatcgaccgctcagcaaag
gaaaagccggcgcctttcctgatctttcaggagagcaatgtgatcattcgcgcactgagg
gaccacctccgcagcgacatcgacgagatcctgatcgatgatgttggcactttcaagctg
gtacgcagcttcttacaacaggtcatgccgcagttcatccaaaaggcaaaactgtatcaa
gatccggttccgctatttagtcgttatcagattgaaagccaaatcgaaaccgcttacagc
cgcgaagtccccctgccatccggcggagccattgtcattgatcacagcgaagcactgact
gcgatcgatatcaactccgctcgcgcaactaaaggcggcgatatcgaagaaactgctctg
aacacgaacttggaagctgccgatgaaattgcgcgccaactcagacttcgagacttgggc
ggtttgtttgtcatcgacttcatcgatatgatggcggcgcgcaatcagcgcgctgtagaa
aaccggctgcgcgaagccatcaaagcggatcgcgcgcgagttcaaatcggccgaatttcc
cgcttcggcttgctggaaatgtctcgccagcggctccgcccgtcgttgggcgagtctagt
ctactcacctgtccgcggtgcaacgggcaaggttccgtgcgaagcgtacaatcgctggct
ctctcggtgctgcggatcatcgaagaagaggcgatgaaaaaaaataccgagaaggttatc
gctcatttaccgatcgactctgctacgtacttgcttaacgaaaaacgctcggctatcgcg
gatatcgaaaagcgccaccaagtcagcgttatcgtagtgcccagcaagcacctggaaacg
ccggcgtacgaaatccagcgtgtgcgaagcaccggcacggaagaggaaagcgaccgaaaa
cccagttatcagatgttccgctcggctgaacccgagctcccccgatttacgagggaatcc
gcatcggtcagccctgagccggccgtcaaggaatttctacctacccaccctgcaccaatc
tctggagccagcaaacaggctgcaggaggcttcatcaaacgattttggtctattttgacc
ggaagcaagatcgacgaagaaacggagagagcaagccaaaagcctagatcaacatctttg
caggcggctcagccgcagccttatcgacccgccgaggtcaaggaacgccaacatttcatt
ggtggagaaatccttgaaccgcgagagcctgaaactcgcacgattgttccggagaaacag
gagtccagcaacggcgacaaccgaatccgagatcagtcaaggcgcgcgggatcacggaga
aggcgctctagaaggggcgaatctggcttagcacgcgatggccaaccaagtcagtcccga
gactttgtcccggagagggccgaggaagaccttctgcggatggaggagagcctgacgatt
agtcatgaatcgacaaatgaagaatcgccccaagccataatggccgtgccaacgcccagc
gatgagacttcaaccgtggatgaactgaccggcacgtcgcacgaacgcgaggaaaattcc
gaagcgccaatcatctacctgccacggtctatagcaccagaagaaaatctagccgagcgg
gaagacgctaggtcaatccacatgcctgccatcggaaccgttgagctcgagtccgtttcg
gagaacaaagaagaaatcgaagcggaaaattcgaatcccgaagtcagaaaatcacctcgc
cggtctttagccagacgtcgggggcgcggcagacgggacaggagatttggcgtcaagcgt
attgaatctggtgaaggactagaagatgccacggcgcctcaggacgatcaccatgaaaca
agcgagaatttatcggcaaccgacgacaaccgctattccgacgggtaccagccaactgaa
gagagcagaaccacggccaccgtcatcgtacctgacaattcaagtgtggaaaacggcacg
gagttagattga
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