Methylocaldum szegediense: MSZNOR_3591
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Entry
MSZNOR_3591 CDS
T09668
Symbol
rpoA
Name
(GenBank) RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MSZNOR_3591 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msze03021
]
MSZNOR_3591 (rpoA)
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_3591 (rpoA)
Enzymes [BR:
msze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MSZNOR_3591 (rpoA)
Transcription machinery [BR:
msze03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MSZNOR_3591 (rpoA)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MSZNOR_3591 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
CAI8908577
LinkDB
All DBs
Position
MSZNORmain:3483186..3484181
Genome browser
AA seq
331 aa
AA seq
DB search
MQNYLANLIKPRLVDVNPIDRNSARIVIEPLERGFGHTLGNALRRVLLSSIPGWAVTEVT
IEGVLHEYSTIDGVQEDVIDILLNLKNLAIRIPGGQEATLRLNKTGPGKVTAADIELTHD
AEIFNPELEIANLTHSGKLSMTLKVEKGRGYQPVGARSAGQMESAVGVLRIDASFSPIRR
VSYLVENARVEQRTDLDKLILELETNGTVDPEEAVRQAATILNEHLSVFVALKSEETPKV
SEEKPRFDPLLLRSVDDLELTVRSANCLKAENIFYIGDLIQRTEVDLLKTPNLGKKSLTE
IKDVLATKGLSLGMRLENWPPEGLKREQQDS
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaactacttagcgaatttaattaagccgcgactggttgacgttaatcctattgat
cgcaacagcgcgcggatcgtaatcgagccactcgaaagagggttcggtcacacgctcggg
aatgcgctgagacgggtactactttcgtcaatacccggctgggcagtcacggaagtgacg
atagaaggtgtattgcacgaatactcgaccattgacggcgtgcaagaggacgttattgat
atcctcctaaatcttaaaaacctcgctattcgcattcccggtgggcaagaggcaacgctt
aggttaaataaaacagggcctggaaaggtcacggcagctgacatcgagcttacgcatgat
gcggaaattttcaacccggaactcgaaatcgcgaatctgacccattcggggaagttaagc
atgaccctgaaggttgaaaaaggtcgcggttatcaaccggtcggcgcccgcagtgcggga
caaatggagtcggctgtcggcgtgcttagaatcgacgcgtcgttcagtccgattcgtcgg
gtgtcctatctggtggagaatgcacgtgtcgagcagcggacggatttggataagctcatc
ctcgagctcgagacaaacggcacggttgacccggaagaggctgttcgtcaagcggcaaca
atcttgaatgagcatttgtcggtgtttgttgctcttaagagcgaagagacaccaaaggtt
agcgaggaaaaaccgcgattcgatccgcttttgctaagatcggttgatgatttggaattg
accgtacggtcagcgaactgcttgaaagcggaaaacatattttacatcggcgatctgatt
caaagaacagaagtggatttgttgaaaacgccgaaccttggaaagaagtcgctgaccgag
attaaagacgttttagctacaaaagggttgtcgctcggcatgcgacttgagaattggccc
ccggagggtcttaaacgagagcaacaagactcctaa
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