Methylocaldum szegediense: MSZNOR_3869
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Entry
MSZNOR_3869 CDS
T09668
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03030
DNA replication
msze03430
Mismatch repair
msze03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MSZNOR_3869 (dnaE)
03430 Mismatch repair
MSZNOR_3869 (dnaE)
03440 Homologous recombination
MSZNOR_3869 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msze03032
]
MSZNOR_3869 (dnaE)
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_3869 (dnaE)
Enzymes [BR:
msze01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MSZNOR_3869 (dnaE)
DNA replication proteins [BR:
msze03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MSZNOR_3869 (dnaE)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MSZNOR_3869 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
DUF655
SSB
Motif
Other DBs
NCBI-ProteinID:
CAI8922467
LinkDB
All DBs
Position
MSZNORmain:complement(3754695..3758213)
Genome browser
AA seq
1172 aa
AA seq
DB search
MTEALDPRFIHLRVHTEYSLVDGLIDVKALVKRTAELGMPAVAVTDQSNLFALVKFYKAA
LAEGVKPVAGADVLLYNHVDPASPYAFTLYVQNAVGYRTLTELISRSYQENQHQGVPQLM
PEWLEEKNEGLLALSGGRRGDIGQALLAGNTGEAKRLLEHWLEVFDQRFYLELQRTGRPN
EEEYIEGALNLAIEFDAPVVATNDVRFISPSEFEAHEARVCIHQGRVLDDPRRPRDYSEQ
QYLKSPEEMEQLFADIPEALENTVEIAKRCSLELTLGKNFLPQFPVPEGMTTAEFFAEQS
RKGLKERLAVRPPAGKGTLEERRKRYEERLEMEISVINQMDFPGYFLIVADFIQWAKKND
IPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMERRDEVI
DYVARKYGRDRVSQIITYGSMAAKAVVRDVGRVLGHSYSFVDKIAKLIPFELGITLDKAL
NDSEDLRKLYESDEEVRTLIDLAKSLEGLARNAGKHAGGVVIAPSRLIDFSPLYCEPGGE
NLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKSINKQRAEKGEPPIDIAQIPLDDPD
TYRLLKNCQTTAVFQLESRGMKDLIRRLQPDCFEDIIALVALFRPGPLQSGMVDDYINVK
HGRTKAEYPHPILEPILKPTNGVIVYQEQVMQIARDMAGYTLGGADLLRRAMGKKKPEEM
AKQREIFVSGAIQKGVDESIAGYIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKAHFPA
AFMAAVLSSDMDNTDKVVVLIEECREMKLTVQPPDINRSEYRFAVLDDRTILYGLGAIKG
VGETAIRDILEERQKGGPFVDLYDFCRRVDLRKVNRRVIEALIRSGTLDSIDPNRARHMA
ELSDAIKAAEQHGAMAATGQDDLFGLGGLAVTNDTPRAEMVVEPWPEDERLAYEKMTLGL
YLTGHPIGPYESEIQHFVTARLGKLSLDNERGATGRREMRVVVAGLVVELRTRQNKNGKR
MAFATLDDRTGRLEVAVFSEVLEKYREHLVKDTLLVVEGNLSFDDYAGQLRLTAENLFTM
AEARAHFAKHLFIQWPSAGTSTDRPSDQWVNELVDLLTPFRGGSCPIYIEYRGKAAQTTI
QLGESWRVHPGDELIARLQKRVGADKVKLHYQ
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagctctcgatccccgtttcattcacctccgcgtccacaccgagtattcccta
gttgacggcctgatcgacgtgaaggccctggtcaagcgaacggcggaactcggcatgccg
gcggtagcggtgacagaccagtccaatctgtttgccttggtcaagttctacaaagccgcc
ttggccgaaggtgtgaaacccgtcgccggagccgacgtgttgctttacaaccacgtggat
ccggcttcgccatacgcgttcacgttgtacgtgcagaatgccgtgggttaccgcaccctg
acagaactgatttcccgcagctatcaagagaaccagcatcagggtgtgccacagttgatg
ccagagtggctggaagaaaagaacgaagggctcttggcattatccgggggacgccggggc
gatatcggtcaggctttgctggcaggcaacaccggtgaagccaagcgcctactagaacat
tggctcgaagttttcgaccaacgcttttatttggaactacaacgcaccggacgaccgaac
gaagaggaatacatcgaaggcgccttgaacctcgcgatcgagttcgatgcgccggtggtc
gccaccaacgacgtgcgtttcatcagcccctcggaattcgaagcgcacgaggcccgggta
tgcattcatcagggtcgggtattggacgatccgcgccgcccgcgagactacagcgaacaa
cagtacctcaagagtccagaggaaatggaacagttgttcgccgatattccggaagccctg
gaaaacacggtggaaattgccaagcgctgcagtcttgagctcaccttgggcaagaacttt
ctgccccaattcccagtgcccgagggcatgacgacggcggagttcttcgcagagcaatca
cgcaaagggttgaaggagcgtctcgccgtgcgcccacccgccggaaaaggaacgttggaa
gaacggcgcaagcgctacgaggaacggctggaaatggaaatttcggtgatcaaccaaatg
gatttccccggctatttcctgatcgtggccgatttcatccaatgggccaagaaaaacgac
attccagtggggcccggacgcgggtccggcgcgggttcgctggtggcttacgcactcaaa
atcaccgatctcgatccgatcgagttcgatctattattcgagcgcttcttgaaccccgaa
cgcgtgtccatgcccgacttcgacgtcgatttctgcatggagcgccgagacgaggtcatc
gactacgtggcgcgtaaatacggacgcgaccgcgtgtcccagatcatcacctacggcagc
atggcggccaaggcggtggtgcgcgacgtaggccgggtcttgggccattcctacagtttc
gtggacaagatcgccaagctgatcccgttcgaactggggatcaccttggacaaggctctc
aacgacagcgaagacctcagaaagttgtacgagagcgacgaggaggtccgaacgctcatc
gacctcgccaaatcgctcgaaggcctcgcgcggaacgccggtaagcacgctggcggcgtc
gtcatcgcgccttcccggctgatcgatttttccccgctgtactgcgagccgggtggcgaa
aacctggtgacccagttcgacaaagacgacgtcgaagccgtcggcctggtcaagttcgac
ttcttgggacttagaaccttgaccatcatcgactgggccgtgaaatccatcaacaaacaa
cgggccgagaaaggcgagccgcccatcgatatcgctcaaatcccccttgacgaccccgat
acctacaggctgctgaaaaactgccaaaccaccgccgtcttccagctcgaatcacgcggc
atgaaagacctgatccggcgcctacagccggattgcttcgaggacatcatcgccctggtg
gcgctattccgtccgggaccgctgcaatcgggcatggtcgacgactatatcaatgtcaag
cacggccgcaccaaggcggaatacccgcatcccattctcgagcccatcctgaaacccacc
aacggcgtcatcgtctaccaggaacaggtgatgcaaatcgcccgcgacatggccggctac
accctcggcggtgccgaccttctgcgccgcgccatgggcaagaagaagcccgaggaaatg
gccaaacaacgggagatctttgtgtccggcgcaatccagaagggtgtcgacgagagcatc
gccggctacatcttcgacctcatggagaaattcgccggctacggcttcaacaagtcgcat
tcggcagcctatgccctggtgtcctaccagaccgcctggctcaaagcccatttcccggct
gcattcatggcggcggtgctatcctcggacatggacaacaccgacaaggtcgttgtgctg
atcgaagagtgccgggaaatgaagttgacggttcagccgcccgatatcaatcgctccgaa
taccggtttgcggtgctcgacgaccgcacgatcctgtacggtctcggcgcgatcaagggc
gtcggcgaaacagcgatccgcgacattcttgaagagcgacaaaagggcggcccgtttgtg
gatctgtacgacttctgccgtcgggtcgatctgcgcaaggttaatcgacgggtcatcgaa
gccctgatccgttccggcacgctggattccatcgatccgaatcgcgcacgccatatggcg
gagctgtcggatgcgatcaaggccgccgaacagcacggcgccatggccgcgactggacag
gatgatctattcgggctcggaggcttggcagtaaccaatgatacgccgcgtgcagagatg
gtcgtcgaaccttggccggaagatgagcgactggcgtatgaaaaaatgacactggggctt
tatctcaccggccatcctataggcccttacgaatccgagatccagcacttcgttaccgcg
cgtctcgggaagttgtcgctcgacaacgagcggggggcaacgggacggcgggaaatgcgc
gtggtggtcgcagggctggtcgtggagcttcgcacgcggcagaacaagaacggcaagcgc
atggctttcgccactctggacgatcggacgggaaggctggaagtcgcggtgttctcggaa
gtcttggaaaaataccgcgaacatttggtgaaggacaccctgctcgtcgtcgagggcaat
ttgagcttcgacgactatgcaggccagcttcgtctcacggccgaaaatctgtttaccatg
gcggaggcgcgcgcgcactttgccaaacatctttttattcaatggccatccgccgggacg
agcaccgatcgcccgagcgaccaatgggtaaacgagctggtcgatctactcacgccgttc
cgcgggggttcctgtccgatttacatcgaatatcggggaaaggccgcacagacgacgatc
cagctcggcgaaagctggcgcgtgcatcctggcgacgaattgatcgcgcgcctgcaaaag
cgtgttggagcggacaaggtgaaactgcactaccaatga
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