Methylocaldum szegediense: MSZNOR_3993
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Entry
MSZNOR_3993 CDS
T09668
Symbol
yjgR
Name
(GenBank) DUF853 domain-containing protein YjgR
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
msze
Methylocaldum szegediense
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_3993 (yjgR)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
MSZNOR_3993 (yjgR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HerA_C
DUF87
AAA_16
AAA_10
AAA_22
ResIII
FtsK_SpoIIIE
Hydrolase
AAA_30
T2SSE
TrwB_AAD_bind
AAA_19
nSTAND3
AAA_28
AAA_7
P-loop_TraG
Motif
Other DBs
NCBI-ProteinID:
CAI8928798
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Position
MSZNORmain:complement(3866504..3868012)
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AA seq
502 aa
AA seq
DB search
MTEPLLIAKGRNPLFMLPSMANRHGLISGATGTGKTVTLQVLAERFSRIGVPVFLSDIKG
DLSGLCQPGDASPKLAERLSLLGIQDHTFTGFPVVFWDVFGEQGHPARATISEMGPLLLS
RMLNLNETQEGVLPLVFKIADDSGLLLLDLKDLRAMLQFVGENAGQFTTAYGNISTASIG
AIQRGLMAFESQGGDRLFGEPSLNIDDLMQTAPDGRGVVNILAADKLMQAPKVYAAFLLW
LLSELFEHLPEVGDRDKPKLVFFFDEAHLLFDDAPEILLDKIEQVVRLIRSKGVGVYFVT
QNPLDVPDKVLGQLGNRIQHALRAFTPRDQKAVRSAAETMRDNPELDEKTAITELGVGEA
LVSLLDEKGRPHIVERAFILPPQSKIGPVDAAQRKRLIGESPIAGYYEKTVDRESAYEML
KVRAAEDLQRRAGEAGRPDSRPAAKGIFDTLGSILGTPSRGKGKQRESAMEAFAKSAARS
IGRELGRELLRGVLGSLSGRRR
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaccattgttgatcgccaaaggccggaatcctcttttcatgctgccgtccatg
gccaaccgccacggcctgatcagcggggcgactggcaccggcaagaccgttacgctgcag
gtgctggcggagcgtttcagccgtatcggcgtgccggtgttcttgtcggacatcaagggt
gacctatcggggctgtgccagcccggggacgctagcccgaaattggccgagcgactttcc
ctgctcggtatccaggaccacacattcacagggtttccggtcgtgttttgggatgttttc
ggcgagcagggacatccagctcgggcgaccatttcggaaatgggacccttgctgctctcg
cgcatgctcaatctgaacgaaacccaggaaggcgtgctccccctagtgttcaagatcgcg
gacgatagcggcttgctcttgctcgatttgaaggatttgcgcgcaatgctccagtttgtg
ggcgaaaacgcgggtcaattcacaaccgcctacggcaacatctccaccgccagcatcggc
gctatccagcgcggtttgatggcctttgaaagccaggggggagatcgattgttcggcgaa
ccctccctgaacatcgacgatctcatgcaaaccgcgccggacggacggggcgtggtcaat
atcctcgccgctgacaagctcatgcaggcaccgaaagtctatgccgcgtttctgctctgg
ctgttgtcggagctgttcgagcacctgccggaagtgggtgaccgcgacaagcccaagctg
gtgttctttttcgacgaggcgcatttgctgttcgacgacgctcctgagattttgctggac
aaaatcgagcaagtcgtgcgtctgatccgctccaagggcgtaggcgtttatttcgtgact
cagaaccctttagatgtgccggacaaggttttgggccaactcggcaaccgcattcagcac
gcactcagagccttcacgccgcgcgatcagaaagcagttcggtcggccgccgaaaccatg
cgcgacaatccggagctggacgaaaaaaccgcgattaccgagctgggggtgggcgaagcc
ctggtctcgctgctcgacgagaagggccgcccgcacatcgtcgagcgggccttcattctg
ccgcctcaaagcaagatcggccccgtcgatgccgctcaacgaaagcgactgatcggcgag
tcgcccatcgctggctattacgaaaagaccgtggatcgagagtctgcatacgaaatgctc
aaagtgcgtgctgctgaggatctccagcgaagagccggagaagccggtcgtcctgattcc
agaccggcagccaagggcattttcgatacgctcggcagcattctcggtactccgtcgcga
ggcaagggcaaacagcgggagtcggccatggaagccttcgccaagagcgccgccagaagc
attggccgcgaactgggacgggaacttctacgcggcgtgctcggatctttgagcgggcga
agacggtga
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