Methylocaldum szegediense: MSZNOR_4227
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Entry
MSZNOR_4227 CDS
T09668
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
msze
Methylocaldum szegediense
Pathway
msze03420
Nucleotide excision repair
msze03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MSZNOR_4227 (uvrD)
03430 Mismatch repair
MSZNOR_4227 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msze03400
]
MSZNOR_4227 (uvrD)
Enzymes [BR:
msze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSZNOR_4227 (uvrD)
DNA repair and recombination proteins [BR:
msze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MSZNOR_4227 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
MSZNOR_4227 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CAI8940387
UniProt:
A0ABN8XAW4
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All DBs
Position
MSZNORmain:complement(4097170..4099335)
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AA seq
721 aa
AA seq
DB search
MDITPIIGPLNPAQREAVTSPTPALLVLAGAGSGKTRVLVHRIAWLMQMEGISPHGILAV
TFTNKAASEMRGRIEQLLNISAQGLWVGTFHGLAHRLLRRHAKEAGLPDAFQILDSDDQH
RLIRRVLKSLDLDEARWPPRQVQWFINAHKEEGRRARHLPESYDPYQKQMQRIYLAYEET
CERSGLVDFAELLLRAHEFLRDTPEVLEHYQRRFHHVLVDEFQDTNRIQYAWLRLLTQER
ENLFVVGDDDQSIYSWRGAKVENLHRFQKDYPSHRLIRLEQNYRSTSNILNAANALIANN
EGRLGKTLWTEGGIGEPISVYAAFNEQDEAYFVAERIKQWAQEGNARRDAAILYRSNAQS
RQFEEKFLAMGIPYRVYGGLRFFERAEIKDALAYLRLIANRHDDPSFERVVNTPVRGIGA
KTIDLIRDVARAERCSLWQAAEALCRDSALPARARTPLTGFLQLIEAMARDTAEHTLWEQ
VQHVVLASGLRAHYEKEKGEQAEARIENLDELINAARQFEYEPQLDMELSKLDQFLSHAA
LEAGENQSDEFEDCVQLMTLHAAKGLEFDLVFIVGLEEGLFPSLQSLEEPGRLEEERRLC
YVGITRAKRKLFLTYAETRRLYGKETYPRPSRFLREIPSEYLQEVRMRGSIGRPMMSSHV
SSGVSERASVYKLGQRVRHAKFGEGVILQYEGEGNQARVQVNFAEAGTKWLMLAYANLQP
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacattacccctatcatcggtcctctaaatcctgcgcagcgggaggcggtcacgtca
cctaccccagctctcttggtattggccggcgccggaagcggcaaaacccgcgtgcttgta
caccgcattgcctggctcatgcaaatggagggtatttcaccgcacggaattttggcggtt
acctttaccaacaaagccgcgagcgaaatgcgaggtcgcattgaacagcttctgaatatc
tccgcccagggcctatgggtcggcacctttcacggtctcgcacaccgcctattgcggcgt
catgccaaggaagcaggactacccgacgcttttcagatccttgattccgacgatcagcat
cggctcattcgccgcgtgctcaagagccttgatctggacgaagcgcgctggccgccccgt
caagtgcaatggttcatcaatgcgcacaaagaagaaggccgcagggcccgccatctcccg
gaatcgtacgatccataccaaaagcagatgcaacgcatctatctcgcctacgaggaaacc
tgcgaacgatccgggctagtggattttgccgaattgctgctgcgcgcccacgaatttctc
cgcgacacgccggaggtgctggagcattatcagcgccgctttcaccacgtactggtagat
gaattccaggacaccaaccggattcagtatgcatggctgcgactcttgacccaggaacgc
gaaaacttgttcgtcgtgggcgacgacgatcagtccatctacagttggcgcggagccaaa
gtggaaaatctccaccgctttcagaaagactatcctagccaccggctcatccggctagaa
cagaattaccgttccaccagcaacatcttgaacgcggcgaacgctctgatcgcaaacaac
gagggtagactcggaaagaccttatggaccgagggcggcatcggggagccgatctccgta
tacgccgctttcaacgaacaggacgaggcttatttcgtcgccgagcggatcaaacagtgg
gctcaggagggcaatgcccgtcgagacgccgctattctttaccgttccaacgcacagtcc
cgacagttcgaagaaaaatttctggccatggggataccgtaccgggtctacggcggactt
cgcttcttcgaacgtgcggaaatcaaagacgcgctcgcctatctccgcctgatcgccaac
cgccacgacgatccatctttcgagcgcgtcgtcaatacgcccgtacgtggaattggcgcc
aagacaatcgacttgatccgcgacgttgcccgcgccgagcgctgctccctctggcaggcg
gccgaagctttgtgccgcgactctgcgttgccggcccgagctcgaacgccactgaccggc
tttctgcagctgatcgaagccatggcccgggacacggcggaacatacgctttgggaacag
gtgcaacatgtggttttggcttccggtctccgcgcccattatgaaaaggagaaaggcgag
caagccgaagcgcgaatcgagaacctggacgagctgatcaacgccgcacgccagttcgaa
tacgaaccgcaactggacatggaactgtcgaaactcgaccagtttctatcccatgctgca
ctggaggccggagagaatcaaagcgacgagttcgaggactgcgtgcagctcatgacccta
cacgcggccaaagggctggaattcgacctggtattcattgtcggactcgaggaaggactg
tttcctagcctgcagtccttggaagagcccgggcgcctggaagaagaacgccgcctctgc
tatgtgggcatcacccgtgcgaagcgcaagctttttcttacctacgcggagacccgccgc
ctctacggcaaagaaacctatccccgcccttcccggttcctgcgggaaattccgtccgag
tatcttcaagaggtacgcatgcgcggaagcatcggacggccgatgatgtcctcgcacgtt
tcatcaggcgtgagcgagcgtgccagcgtctataaactcggacagcgcgtccggcacgcg
aaattcggcgagggcgtaattcttcagtatgagggagaaggcaaccaagccagggttcag
gtgaacttcgccgaggctggcactaaatggctaatgcttgcctacgccaatttacagccg
gcttaa
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