KEGG   Methylocaldum szegediense: MSZNOR_4970
Entry
MSZNOR_4970       CDS       T09668                                 
Name
(GenBank) ATP-dependent helicase Lhr and Lhr-like helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
msze  Methylocaldum szegediense
Brite
KEGG Orthology (KO) [BR:msze00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:msze03400]
    MSZNOR_4970
Enzymes [BR:msze01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MSZNOR_4970
    5.6.2.6  RNA 3'-5' helicase
     MSZNOR_4970
DNA repair and recombination proteins [BR:msze03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    MSZNOR_4970
SSDB
Motif
Pfam: DEAD_assoc DEAD WHD_Lhr WHD_4th_Lhr WHD_3rd_Lhr Helicase_C ResIII Cas3-like_C_2 AlkZ-like WHD_DprA TrmB PhoH AAA_25 HTH_IclR PglZ_C TraG-D_C
Other DBs
NCBI-ProteinID: CAI8974610
UniProt: A0ABM9I9H3
LinkDB
Position
MSZNORmain:complement(4771422..4775741)
AA seq 1439 aa
MILDRFHPAVSAWFRDAFPAPTECQTEAWDAIKSGRHTLIAAPTGSGKTLAAFLAAIDDL
VREGEVFGLPEETRVLYISPLKALSNDIHKNLEAPLDGINAKLFELGSTDVAIRSQVRTG
DTPALARAAMSKHPPHILVTTPESVYILLTSEGGRRMLKTVRTVIVDEIHAVVGSKRGSH
LALSLERLERLVEHRLTRIGLSATQNPIESVARFLTGGADCRIIDTGHRRRLDLAIELPD
SPLEAVLSQQAAKEIYDRMTALIEAHKTTLIFVNTRRLAERVARALSERLGEEHVTSHHG
SLSREQRLSAEHRLKTGKLKALVATASLELGIDVGDVDLVCQLGTTGSISTFLQRVGRSG
HFAGGLPKGRLFPASRDDLIECIALLDAVRRGELDRLVMPQKPMDVLAQQIVAMVAAEDW
SEDELYRTVCRAYPYRDLSRKEFDDVVKMLAEGFSSRRGTRGAYVHRDGIHKRLRARRGA
RLTAVTCGGAIPDNSEYRVILEPSGEFIGTVDEDFAIESLAGDIFQLGNASWRVLRLEAG
TLRVEDARNQPPSIPFWFGEAPGRTHELSYAVARLRREIEDRLEDNACDRNLNLSAARAF
LENEVSISPLAASQAVNYLAAAKLALGTLPTLDTLVFERFFDESGGMQFIIHAPYGSRVN
RAWGLALRKRFCRTFNFELQAAATENAIILSLGTSQSFALEDVTRFLNTRTVRDTLVQAL
LAAPMFTVRWRWNAVCSLALKRFQGGRKTPPYLLRMQAEDLVTAVFPDQLACFENIVGDR
EVPDHPLVNQTVHDCLTEAMDIDRLIEVIGGIENGTIRVVCRDLTEPSPLAAEIVNSKIY
SFLDDAPLEERRTRAVASRRWLDPSEASDLGRLDQAAIDRVRQEAWPEAANADELHDALQ
MLGFLRQSEAEIGWEGFFRELKLQGRVTELVGPTGNQLWIAAERLPQFRAVYAQADGSSS
ARIVYAAQLPPEYRAQNWTPEDALKEIVRARIDCTGPVRAAELAEALGLPVTRIEAALSA
LQTEGFVLRGSYTPGSNTEEWCERRLLARIHRYTINRLRQEIEPVSGADFMRFLFRWQHV
HPENRMQGAQALAAIVAQLEGFEAAAVAWEGDLLPARIADYDPAWLDALCLSGKIVWTRL
SASKSGQGPVKSSPMALVSRRHLAYWQQFAAACDSTDLSPSAQRVADILSTRGALFFEEL
AQWAGLLPTQLENALAELVARGRVASDSFMGLRALLMPEQKKQRYRGLSFGMAEAGRWTL
VQPPPRIDESPSEAVNQEAAEHVAGTLLKRYGVVFRALLARETIVPAWHDLLRIYRRLEA
RGEIRGGRFVAGHFGEQFALPEAVEILRAVRKEQDRETLVTLSAVDPLNLVGIVTPGAKI
PALPGNRVLFRGGIPTALYIGKETQFLVSVEKHREWEFKNRLTQRTIPPQLRAYLGSAS
NT seq 4320 nt   +upstreamnt  +downstreamnt
atgatcctcgaccgctttcatcccgccgtctcggcctggttccgcgacgcctttcccgcg
cccaccgaatgccagaccgaagcctgggacgccatcaaatccggccggcatacgctgatt
gccgcgcccaccggctccggcaaaaccctcgcggcgttcttggccgccattgacgacctg
gttcgggaaggcgaagtcttcggcttgccggaagaaacccgcgtactctacatctcgccg
ctcaaagcgctgagcaacgacatccacaagaacctcgaagcgccgctggacggcatcaac
gcaaaactgttcgagctcggctcgaccgacgtggcaatccgctcgcaggtccgaaccggc
gacaccccggcgctggcgcgggcggccatgagcaagcatccgccccatatcctggtgacc
acgcccgagtcggtttatatcctgctcaccagcgagggcggccggcgcatgctgaaaacc
gtgcgcacggtgatcgtcgacgaaatccacgcggtggtgggtagcaagcgcgggtcgcac
ctggccttgtcgctcgaacgtctagaacgcctggtcgagcaccgccttacccgcatcggc
ctctccgcgacccagaatcctatcgagtcggtcgcccgctttctgaccggcggggccgat
tgccgcatcatcgacaccggacaccggcgccggctcgaccttgccatcgaattgcccgat
tcgccgctcgaagcggtgttgtcccagcaggcggccaaggaaatctacgaccgcatgacg
gcgctgatcgaggcgcacaagaccacgctgatcttcgtcaacacgcgccgcctggcggaa
cgggtggcccgcgccctgagcgaacggctgggcgaagagcacgtcacctcgcaccacggc
agcctgtcgcgggaacagcgcctgtccgccgaacaccgcttgaaaaccggcaagctgaaa
gcattggtcgccactgcctctttggaactcggcatcgacgtgggcgacgtggacctggtt
tgccaactgggtaccaccggctcgatctccacctttctgcagcgggtgggccgttccggt
catttcgccggcggtttgcccaagggccggctgttcccggccagccgggacgatctcatc
gagtgcatcgccctgctagacgcggtgcggcggggcgaactggaccgtttggtcatgcca
cagaaaccgatggacgtcctggcccaacagatcgtggcgatggtggccgcggaggattgg
tccgaggacgagctctatcgcaccgtctgccgggcatatccctaccgggatctgagccgg
aaggaattcgacgacgttgtgaagatgctggcggaaggcttcagcagccggcgcggcacg
cgcggtgcctacgtgcaccgggacggtatccacaagcgcctgcgcgcccgtcgcggcgcg
agactcaccgccgtgacctgcggcggggcgatcccggacaattccgaataccgcgtgatc
ctggaaccttcgggggaattcataggcaccgtcgacgaagatttcgctatcgaaagtctg
gccggtgacattttccaactcggcaacgcgagctggcgagtcttgcgcttagaagccggc
accctgcgcgtcgaggacgcccgtaatcagccgcccagcatcccgttctggttcggcgaa
gccccggggcggacgcacgagctgtcctatgcggtggcgcggctacggcgggaaatcgag
gatcgtttagaggacaacgcttgtgatcgaaacctcaacctttccgccgccagagccttt
ctcgaaaacgaggtcagcatttcgccgctggccgcatcgcaggccgtcaattatctcgcc
gcggccaaactcgccttgggtacgctcccaaccctggacaccttggtgttcgagcgcttc
ttcgacgaatcgggcgggatgcagttcatcattcacgcgccctatggcagccgggtcaat
cgcgcctggggcctcgctttacgcaagcgcttctgccgcaccttcaatttcgaacttcaa
gccgccgccaccgagaacgccatcattctctccttaggcacttcgcaaagcttcgcgctg
gaagacgtcactcgtttcttgaatacccgtaccgtgcgcgacaccctggtgcaagcgctg
ctcgcagcccctatgttcaccgtgcgctggcgctggaacgcggtctgttcgctggcgctc
aagcgcttccagggaggccgcaagacgcccccttatctcctccgcatgcaggcggaagac
ctcgtcaccgcggtgttccccgaccagctcgcatgcttcgagaacatcgtcggagatcgg
gaggtgcccgatcacccgctggtcaaccagaccgtgcatgattgcctgaccgaagcgatg
gacattgaccggctgattgaggtaatcggcggaatcgaaaacggcacgatccgcgtggtc
tgtcgtgatctcaccgaaccttcgccgctcgccgccgaaatcgtcaactccaagatttac
agcttcctcgacgacgcgcctctggaagagcgccggacccgcgcggtagcgagccgccgc
tggctcgatccttcggaagcttcagacctcggccgtctcgatcaggcagccatcgaccgg
gtacggcaggaagcctggcccgaagccgccaacgccgacgaattgcacgatgccttgcag
atgctgggctttcttcggcaatccgaggcagaaatcggttgggaaggattctttcgcgaa
ttgaaactgcaaggccgagtaacggaattagtcggcccgaccggcaaccagctctggatc
gcagccgagcgcttgccgcaattccgcgcagtatatgcccaagcagacggctcttcgtcc
gctcgcatcgtttatgccgcacaactgccgccggagtaccgggcacaaaactggacaccg
gaagacgcgctgaaagaaatcgttcgcgcacgcatcgattgtaccgggccggtcagggcg
gcggaactggcggaagccttgggccttccggtcacgcgcatcgaggccgctctctcggca
ctgcaaaccgaaggcttcgtcctgcgcggatcgtacacccccggaagcaacaccgaagaa
tggtgcgaaagacgcttgctggcgcgcatccatcgctacaccatcaaccgtttgcgccag
gaaatcgaaccggtttccggtgcggatttcatgcgttttctgttccgctggcagcacgtg
catcccgaaaatcgcatgcagggcgcacaggcgctcgcggcaatcgtggcccaactggaa
ggcttcgaggcagccgcggtcgcctgggaaggcgatctgctgccggcacgaatcgctgac
tacgatccggcctggctcgacgccttatgcctttcgggcaagatcgtctggacccggttg
tccgccagcaaaagcgggcaaggaccggtcaaatcctcacccatggcgctcgtcagtcgg
cgtcatctcgcctactggcaacagttcgcagccgcgtgcgactcgaccgacttgtcaccc
tccgcacagcgtgtagccgatatcttgagcacccgcggcgcattgttcttcgaagaactg
gcccagtgggcaggactcctgccgactcagctggaaaatgcgctggcggaactggtggcg
cgcgggcgagtcgcctcggacagtttcatgggattacgtgctctactgatgccggagcaa
aaaaagcaacgctatcggggactttccttcggaatggcggaagccggacgctggacactg
gttcagccgccgccgcggattgacgaaagcccgtccgaggcggtcaatcaagaagccgcc
gagcatgtcgccgggactctgctcaagcgttatggcgttgtgtttcgggcgttgttggcg
cgcgagaccattgtgccggcctggcatgacctccttcgtatctatcggcgtctagaagcc
cgcggcgagatacgcggcggacgcttcgtggccggacatttcggcgaacagttcgccttg
cccgaagcggtggagatcctgcgcgcggtgcgcaaagagcaggatagggaaaccctagtc
acgctcagcgccgtcgacccgctaaacctcgtcggcatcgtcacacccggcgccaaaatc
cccgccctccccggcaaccgcgtgctattccggggcggcatcccgaccgccctgtacatc
ggtaaggaaacgcagttcctggtttcggtggagaaacaccgagagtgggaattcaagaac
cggctgacacaacgaaccatcccgccgcaactgcgggcttatctcggctcggcatcttag

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