Methylobacterium tardum: M6G65_23055
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Entry
M6G65_23055 CDS
T08338
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mtad
Methylobacterium tardum
Pathway
mtad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M6G65_23055 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtad03021
]
M6G65_23055 (rpoC)
03400 DNA repair and recombination proteins [BR:
mtad03400
]
M6G65_23055 (rpoC)
Enzymes [BR:
mtad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M6G65_23055 (rpoC)
Transcription machinery [BR:
mtad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M6G65_23055 (rpoC)
DNA repair and recombination proteins [BR:
mtad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M6G65_23055 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_RND
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
URD35374
LinkDB
All DBs
Position
complement(4810852..4815063)
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEVMNLFNQQATPVSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYCVIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILQELDLDKIANDLREEIAVTTSELKPKKLLKRLKIIEAFQMSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVAEGAPGEFKPGNTKNPMQGVYG
DMGELEHALAAKAVSLHSKIKWRWTGIGPDGEPLTKTYETTPGRVILSGALPKHAKVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMALGFTHAFKAGISFGKDDMVVPENK
WSIADTTRALVKDYEQQYNDGLITQGEKYNKVVDAWAKCSDKLAAEMMGRISAVQKDEHG
ADKQVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLADVAQDAVIRETDCGTTNGIKMRAIVDAGRVVAT
LATRILGRATAEDLVAADGTVIVKTGETIEERHLPAINAAGIQEVKIRSVLVCATKSGVC
ATCYGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEG
TIKIRNRAVAKNTDGDLIATGRNVAVVIVGSDGVERAVHRLQYGAKLRVDEGDKIKRGQR
IAEWDPYTRPILTEVDGIVAYEDLVDGQSMTETTDESTGIAKRVVADWRGSARTSDLKPA
MVVVDRDGKALKLPRGSDARYFLPVDAIIGFDPGATVKAGDILARVSTDSAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGTIAFGRDYKNKRRLTLTPHDGSEAVEYLIPKGKHIHL
QDGDVVELGDYIADGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEVTDGGDSDILSGDQIDRTELTDYNEKLLAEGKKPIQGVPVLLGITKASLQTKS
FISAASFQETTRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGSMVADIRSIARRRDAM
ILQQKQTESGAMPVEELPPAAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaaccagcaggccacgccggtcagcttcgaccag
atcaagatctcgatttcatccccggagaagatcctctcttggtcgtacggcgagatcaag
aagcccgagaccatcaactaccggaccttcaagcccgagcgcgacggcctgttctgcgcg
cgtatcttcgggccgatcaaggactatgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtcaccctcgcgcgcgtccggcgc
gaccgcatgggccatatcgagctggccgcccctgtcgcccacatctggttcctgaagtcg
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggaccttgagcggatcctg
tacttcgagtcgtactgcgtcatcgagccgggtctcacccccctgaaggagcgtcagctc
ctgtcggaggaggagtacctgcgcgcgcaggaggagtacggcgaggactcgttcaccgcc
atgatcggcgccgaggccatccggcgcatcctgcaggagctcgacctcgacaagatcgcc
aacgatctgcgcgaggagattgcggtcaccacctcggagctgaagcccaagaagctcctg
aagcggctcaagatcatcgaggccttccagatgtccggcaacaagccggaatggatgatc
ctcacggtcgtgccggtgatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgcttcgcgacctccgacctgaacgacctttaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgcccgacatcatcatccgcaacgagaagcggatg
ctgcaggaggccgtcgacgccctgttcgacaacggccgccgcggccgcgtcatcacgggt
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactactcgggccgctcggtcatcgtggtgggt
ccggagctgaagctgcaccagtgcggcctgcccaagaagatggcgctggagctgttcaag
ccgttcatctacgcgcgcctcgacgccaaggggttctcggccaccgtcaagcaggccaag
aagctcgtggagaaggagaagccggaggtttgggacatcctcgatgaggtgatccgcgag
cacccggtgatgctgaaccgcgcgccgactctgcaccgcctcggcatccaggccttcgag
ccgaagctgatcgagggcaaggcgatccagctgcacccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgcttgaggcgcagctg
gaagcgcgcgtcctcatgatgtcgaccaacaacatcctgcacccggccaacggtcagccg
atcatcgtgccgtcgcaggatatcgttctcggcctctactacctgtcgatcgtggccgag
ggcgctccgggcgagttcaagccgggcaacaccaagaacccgatgcagggcgtctacggc
gacatgggcgagctggagcacgccctggccgccaaggccgtgtcgctacactcgaagatc
aagtggcgctggaccggcatcggaccggacggcgagccgctgaccaagacctacgagacc
acgcccggccgggtcatcctgtccggcgccctgccgaagcacgccaaggtgcccttcgac
gtcgtcaacaagctgatgaccaagaaggagatctcggcgatgatcgacaccgtctaccgc
cattgcggtcagaaggagtcggtgatcttctgcgaccggatcatggcgctgggcttcacc
cacgcgttcaaggccggcatctccttcggcaaggacgacatggtcgtgccggagaacaag
tggtcgatcgccgacacgacccgcgcgctcgtgaaggattacgagcagcagtacaacgac
ggcctgatcacgcagggcgagaagtacaacaaggtggtcgatgcctgggccaagtgctcg
gacaagctggccgccgagatgatgggccgcatctcggccgtccagaaggacgagcacggt
gcggacaagcaggtcaactcgatctacatgatgagccactcgggtgcccgtggctcgcct
gcccagatgaagcagctcgcggcgatgcgcggcctcatggccaagccgtcgggcgagatc
atcgaaaccccgatcatctcgaacttcaaggaaggcctggacgttctggagtacttcaac
tccacgcacggtgcccgtaagggcctggccgacaccgccctgaagaccgccaattccggc
tacctgacccgccgcctcgccgacgtggcgcaggacgccgtcatccgcgagacggattgc
ggcacgaccaacggcatcaagatgcgcgccatcgtggatgccggccgtgtcgtggcgacg
ctcgccacccgtatcctgggccgcgccacggccgaggatctggtggccgcggacggcacg
gtgatcgtcaagaccggcgagaccatcgaggagcggcacctgccggcgatcaacgccgcc
ggcatccaggaggtgaagatccgctcggtgctggtctgcgccaccaagagcggcgtctgc
gctacctgctacgggcgcgacctcgcccgcggcacgcccgtcaacatgggtgaggccgtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacgcagctcacgatgcgcaccttc
cacatcggtggtgcggcccagatcgccgactcgtccttcatcgagtcgagcttcgagggc
acgatcaagatccgcaaccgcgccgtggccaagaacacggacggggatctgatcgccacc
ggccgcaacgtggcggtcgtcatcgtcgggtcggacggggtcgagcgggcggtccaccgc
ctgcagtacggcgccaagctccgggtcgacgagggtgacaagatcaagcgcgggcagcgg
atcgccgagtgggatccctacacccgtccgatcctcaccgaggtggacggcatcgtggcc
tacgaggatctggtcgacggccagtccatgaccgagaccaccgacgagtcgaccggcatc
gccaagcgcgtcgtcgccgactggcgcggctcggcccggacctcggacctgaagcccgcg
atggtcgtggtcgaccgggacggcaaggcgctcaagctgccgcgcggctcggacgcccgc
tacttcctgccggtcgacgccatcatcggcttcgacccgggcgcgacggtcaaggccggc
gacatcctcgcccgcgtctcgaccgactcggccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcccggcgcccgaaggacgcggcgatcatcgccgag
aagtcgggcaccatcgcgttcggccgcgactacaagaacaagcgtcggctcacgctgacg
ccgcatgacggctcggaggcggtcgagtacctgatcccgaagggcaagcacatccacctg
caggacggcgacgtggtcgagctcggcgattacatcgccgacggaaacccggcgccgcac
gacatcctggcgatcaagggcgtggaggagctcgcggcctacctcgtcaacgagatccag
gaggtctaccggctgcagggcgtgtcgatcaacgacaagcacatcgaggtgatcgtccgt
cagatgctgcagaaggtcgaagtgaccgacggcggcgactcggacatcctctcgggtgac
cagatcgatcgcacggagctgaccgactacaacgagaagctgcttgccgagggcaagaag
ccgatccagggcgtccccgtcctgctcggcatcaccaaggcgtcgctgcagaccaagtcg
ttcatctcggcggcctcgttccaggagaccacccgcgtcctcaccgaggcggcggtcaac
ggcaaggtcgacaccctggaaggcctgaaggagaacgtgatcgtcggctcgctgatcccg
gcgggcacaggctcgatggtggcggatatccgctccatcgcccgccgccgcgacgcgatg
atcctgcagcagaagcagaccgagagcggtgcgatgccggtcgaggagcttccgcccgcc
gccgccgagtaa
DBGET
integrated database retrieval system
