Candidatus Moanibacter tarae: DF168_00321
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Entry
DF168_00321 CDS
T09872
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mtar
Candidatus Moanibacter tarae
Pathway
mtar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DF168_00321 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtar03400
]
DF168_00321 (mfd)
Enzymes [BR:
mtar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DF168_00321 (mfd)
DNA repair and recombination proteins [BR:
mtar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DF168_00321 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AWT59142
UniProt:
A0A2Z4ANP7
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All DBs
Position
complement(361386..364802)
Genome browser
AA seq
1138 aa
AA seq
DB search
MRAATRVRNRINHFLTGVNLAAAPAICSQIITGESAPVSILLTINHALAEQWMEDIEFIS
SSIMNTNQVEARILPDLPSLETDSQALFDSECDRLSTLTRLKDFRELKTNDCRLVIVSTP
RGLIHPVPPLTKLLADEIILSSGSEFPFGDLVEKLASELKYDSEAICETPGQFAIRGGLI
DLYPVNANQPYRIDFFGDQIESIRTYDPTTQRSLSEVESLTIMSVPYGRSQTREQNIYDY
LGDSINWILWEPEHLFSEFPSFFSSSEGNHSAVPNFQDLLDSRSQRNDLWYAVSEFEITN
PVLATKGKKEVFCTEPLTGYRTYNFEWEIGVDRLHSEQEARSQFLGKILQWKNEGYVVFL
VTPNRGVEERLTEIIAKNEHLQNISPIFRRGNLRKGFRISFRDSADTIAWSQDNDKIGLV
VVSDSEIFGRYRKHLTGSTNRALPNRSQVDQLLDFSELVEGDMIVHIQHGICAYRGLSKM
KLKGIEEEVLSLEFDGGITLHLPLSESHLLTRYVGLTKVRPKLARLGTNIWDKTRRAAEK
ATLDFAAKLLNLQAQRNLIKGHACSPDTNWQKEFEHAFIYRETPDQLRAIEDIKHDLELP
KPVDRLICGDVGFGKTEVAIRAAFKMVMDGRQVAILVPTTVLAQQHFNTFRERMADFPIV
VEMISRFRTRNQQKAILSQMRSGGVDVIIGTHRLLGRDIHFNNLGLLVIDEEHRFGVRHK
EKLKRLKHNVDVMTMSATPIPRTLYLALMGARDLSVIETPPSDRLPIKTDVKSYSVEIVK
KSISFEVARGGQVFYLHNRVDSIDSVANHLRELLPDLRIAVGHGQMEERDLENIMTRFVA
GEFDVLVCTTIIESGLDIPNCNTIIIEGADRFGLSQLYQLRGRVGRFKKQAYAYLLLHRH
TELIDQARKRLSALRQYTQLGAGYKIAMRDLELRGAGNLLGAQQSGHISGVGFELYCHLL
RQSIARLKGKKSAKIIRTNLRLDFINVGTDEKKEKGNLSPGFAVIKEEELGDSRIGNIEA
YIPSTYVPETRLRIDFYRQLAISVNPSDIKEIQEALVDRFGPIPKPIKALLLVTEIRCLA
ELNGILTVETEGDRLKCHRSSIQRETFIKINGRFPRLTKNSPLPRLREIRTFLSKLRL
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
gtgcgagcagccaccagagtacggaatcgaattaaccactttctaacgggagtgaatctg
gctgcagcccccgcaatctgcagccagattattactggagaatcggcgcccgtctcgatt
ttgctcaccataaatcatgcattagcggaacagtggatggaagatatcgagttcatatct
tccagtatcatgaacacaaatcaggtcgaagctagaattctcccagatcttccatccctg
gaaaccgatagtcaggcattatttgattcggaatgcgatcgtctctcaacattaactcgg
ctcaaggatttccgtgaactgaaaacaaatgattgtagacttgtaatagtctccacacca
aggggcctaatacatcccgtacctccattaacaaaactccttgctgacgagatcatcctc
tcttcaggttctgaattcccttttggagacctagtcgaaaaactggcctcagaactgaaa
tacgactccgaggcgatctgtgagacaccgggccaatttgccattcgtggtggattaatc
gatctctacccggttaatgctaatcagccttaccgtatcgatttttttggcgatcaaatc
gaatccataaggacctatgatccaacaactcaacgctctcttagtgaggttgaaagcctc
acaataatgtccgtcccttacgggcgttcacagacccgggaacaaaatatttatgattac
ctgggggattcgattaattggatactatgggaaccagaacatctcttctcggaatttccc
tcgttttttagctcctccgagggaaaccattccgcagtacctaattttcaggatctactc
gattctaggtcgcaacgtaatgatctttggtacgcagtgtcggaattcgaaattacgaat
cctgttttagcgaccaagggcaaaaaggaagttttctgcacggaaccattaaccggctat
cggacctataatttcgagtgggagattggagtcgatcggttgcattctgaacaagaagcg
aggagtcaatttttaggaaaaatccttcagtggaagaatgaaggttacgttgttttcctt
gttactccaaaccgaggcgtcgaagaacgcctaactgaaatcatcgctaagaatgaacac
ctacaaaatatttctcctatttttcggagaggaaatctgaggaaagggttccgcattagt
tttcgggattctgctgatacaatcgcgtggtcccaggataatgataaaatcggtcttgtt
gtcgtcagcgactctgaaatcttcgggcgttataggaaacatttgactggatcgacgaac
agagcactccccaatcgctctcaagtagaccagttactcgacttctctgaactcgtagag
ggcgatatgatcgttcatatacagcacggcatatgcgcttatcggggcctctctaaaatg
aagcttaaaggtatagaagaagaagtcctctcacttgagtttgatggagggattaccctg
catcttcctctgagcgagtctcacctacttacccgttatgtcggcttaactaaggtcagg
ccaaaactggctcggcttgggaccaatatttgggacaagacccgtcgtgcggcagagaaa
gcgactctcgatttcgcagccaaacttctcaaccttcaagctcaaagaaatctcattaag
gggcatgcctgtagtcccgacactaactggcaaaaggaatttgagcatgcattcatttac
cgagagactccagatcagcttagagcgatcgaagatataaagcacgatcttgaactccct
aaaccggttgaccggctaatctgtggcgatgtcggtttcgggaagacagaagtcgccatt
agagccgcatttaaaatggtaatggatggacggcaagtagcgatactcgtcccaacaact
gttttggcccaacagcattttaatacttttcgcgagcgtatggcagattttcccattgtc
gttgaaatgatcagccgttttcggaccaggaaccaacaaaaagcaatcttatctcaaatg
cgctcaggaggtgtcgatgtgattatcggcacccatcgtcttctcggacgagatatccat
ttcaacaatctcggactccttgtgatcgacgaggagcaccgattcggggtacgacacaag
gaaaagctcaagcgacttaaacataatgtggatgttatgacaatgagtgcgacacccatc
ccccggactctttatctcgccctcatgggtgcccgcgatctcagtgttatcgaaaccccg
ccttcagatcggcttcctatcaagacagatgtcaagagctacagcgttgagatcgtcaag
aagtcaatctcctttgaagtagcccgtggtggacaagtcttctacctccacaaccgagta
gattcaattgattccgttgctaatcatctcagagaactgctccccgatttacgtatcgcg
gtgggccacggccaaatggaagaacgagatttggaaaacatcatgactcgtttcgtggca
ggagaatttgatgtcctggtttgtaccactatcatcgagtccggtcttgatattccaaac
tgcaatacaattatcatcgaaggcgcagatcgtttcgggctctcccagctctaccagctt
cgaggcagagtaggtcgcttcaagaagcaggcttatgcctacctcctcctacaccggcat
accgagttgatcgaccaagctcggaagcgtctttccgctctccgacaatacacccagcta
ggtgctggttataaaatcgcgatgcgggatttagaactccgtggggccggaaatctactg
ggggcccaacagagcggccacatctccggcgtcggtttcgaactttactgtcacctatta
agacagagtatcgcccgactaaaagggaaaaaatctgccaagatcatccgcacaaacctt
cgtcttgacttcataaatgttgggacagacgaaaagaaagaaaaaggcaacctatcccca
ggttttgctgtaataaaggaggaggaattgggggattcccgaattggaaatattgaggct
tatatcccttcgacctatgttcctgagacccgcctccgtatcgatttttaccggcaactc
gctatttctgtcaacccgtccgatatcaaagaaatacaggaggctctcgtagatcgattt
ggtcccattcccaagccgatcaaggcccttcttttagttacagaaattcgttgtctggca
gaacttaatggcatccttaccgtcgaaacagaaggggaccggctaaagtgtcacagatcc
tcaattcaacgcgagactttcatcaaaatcaacgggaggtttcctcgactgactaaaaac
tcacccctcccaagacttcgagaaattcgaacctttctgtctaaactgcggctataa
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