Candidatus Moanibacter tarae: DF168_02267
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Entry
DF168_02267 CDS
T09872
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mtar
Candidatus Moanibacter tarae
Pathway
mtar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DF168_02267 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtar03019
]
DF168_02267 (rnr)
03016 Transfer RNA biogenesis [BR:
mtar03016
]
DF168_02267 (rnr)
Enzymes [BR:
mtar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DF168_02267 (rnr)
Messenger RNA biogenesis [BR:
mtar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DF168_02267 (rnr)
Transfer RNA biogenesis [BR:
mtar03016
]
Prokaryotic type
tRNA degradation factors
DF168_02267 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_Dis3
OB_RNB
VTT_dom
Motif
Other DBs
NCBI-ProteinID:
AWT61041
UniProt:
A0A2Z4AFN5
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All DBs
Position
complement(2605083..2607353)
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AA seq
756 aa
AA seq
DB search
MFNENVIFNLLGDRNYVPMNAREIGENIGSGKHQFRTLQRSLNRLVASGQIARIGERRYC
LPKDANLISGIINFRQNGSATIIPDSESENSRTKVFSVRARDTGVAMHKDRVFAQIDSRT
KRSFSYQVRRKDKGVTVPEPDQARVIRIIERGRKTVSGTLKRSHHYFYVIPDDPRLNFDL
LVPNPKGSALSPKPKVNHKVIVELKEWKDRHLSPEGEIVRVLGKTHSPSAEFEALLNNYH
LAPEFPDPVISECEKIPLAIRKRDLKNRLDLRELYTFTVDPDDAKDFDDALSIQTLGSGD
IMVGVHIADVSAYVRPGSALDREAQKRGNSTYLVGSVIPMLPQSLSNGICSLVEGEDRLT
KTVFLTFSSKGQFKASSFANTVIRSRKRLTYKQTLALLKNVDHDQLMRIPTPPPHQTGSP
GRPLSVLTKDEINSLQKNLQSLWAIAGCLRRQRTNKGSLELDSTEVKLIVDKKGFTERIE
KIQNDESHQLIEEFMLAANESIAKQIGVSKIPLIYRVHDQPERDRLGELREYLLDFAIRV
GDLTHRKEMVKLLRLIKTHPLNSLLRIEVLRSMKPASYRNRRDGHYGLNKTYYTHFTSPI
RRYSDLITHRVLDRYLYSENADTAAVRKIKHYQTSVLSSISSHLTSTQQNSKEAERESVK
VKLLEYFELGMKTRGDQSYEALITDVRNHGFFVELKDSMAYGFVQASDLPQDFYFLSEKE
SALVGRKSGKSYRIGQSVNLYVKKVDRFKRQIDFTL
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacgaaaacgtcatttttaatctcctaggtgaccgaaactatgtccctatgaat
gcccgagaaattggggaaaatataggttcggggaaacaccagtttcgcactttgcagaga
agtttaaaccggcttgtggcctctggccaaattgcccgaattggggaaagacgttactgt
ctgccaaaggacgccaatctgatttccgggatcattaatttcagacaaaatggatctgca
acgattattcctgattcagaatcggagaactcgagaacgaaagtcttcagtgtgcgggca
agagacactggcgttgcaatgcataaggatagggtattcgcccaaatcgatagtcgaaca
aaaagatcgtttagctaccaagtaagacgaaaggacaaaggggttacggtcccagaaccg
gaccaagccagagtcattcggattattgaaaggggcagaaaaactgtctccggtactcta
aaacgaagccatcactatttctacgtaattcctgatgatcccagacttaattttgatctc
ctcgtacctaaccccaagggatccgccctgtcccctaaaccaaaagttaatcataaagtc
atcgtcgaactcaaggagtggaaagatcgtcacctttctccagaaggtgagatagttcgc
gttctcggcaaaacccacagcccttcagcagaatttgaagccctgctgaataactatcat
ttggcgcctgaattccctgatcccgttatctctgagtgtgagaaaatcccattagccatc
cgaaagagagaccttaagaaccgtctcgatctccgtgaactttacacttttaccgtcgat
cctgatgatgctaaggattttgatgacgcgctttcgattcagacattaggttcaggcgat
attatggttggtgtccacatcgcggatgtgagcgcctatgtaagacccggttctgcactt
gatagagaggcacaaaaacggggaaactccacctatcttgtaggttctgtgattccaatg
ctccctcagtctctctccaacgggatttgcagtttagtagagggggaagatcgtctgaca
aaaaccgtcttcctcactttttcttcaaaagggcaatttaaagcctcttccttcgctaac
actgtgattcgaagtcgcaagcgtcttacttacaaacagacccttgcgcttctgaaaaat
gtcgaccacgatcagctaatgcggattccgacccctcccccacatcaaaccggttcgccg
ggtcgcccgttatcagtcttgactaaagatgaaataaacagcctccaaaaaaacctccaa
tcactttgggcaatagcaggatgcttgcgcagacagcgaaccaacaagggaagtcttgaa
ctcgattccactgaagtgaaactaatagtcgacaagaaaggctttaccgaacggattgag
aaaatccaaaatgatgagagccatcagctcatagaggagttcatgctagcagcgaacgaa
agcatagctaaacaaattggagtttctaagatcccgcttatttaccgagtccacgaccag
ccggaaagggaccggctcggggaacttcgtgaatatcttttggacttcgcgattagggtt
ggagaccttacccatcgcaaggaaatggtgaaactactccgactaatcaaaacacacccc
ctcaattcccttctccgtatcgaggttctgcgcagcatgaagcctgcatcgtatcgtaat
cgccgggacggtcactatggcttaaacaaaacctattatacccatttcacctcccctatt
cggcgttactccgatctaatcacgcatcgagttttagaccgatatctctattctgaaaac
gctgacactgcagctgttcgaaaaataaagcattaccagacctcagtcctttcctctatc
tcaagccatctcacgtcgacccaacaaaatagcaaggaagcagagagagaatccgttaag
gtaaaactacttgaatatttcgaacttggaatgaaaacccggggtgatcaatcctacgaa
gctctgatcaccgatgtgagaaatcatggattcttcgtggaacttaaggattcgatggct
tatggattcgttcaggcttcagatctacctcaagatttttatttcctaagcgaaaaagag
tcggctctcgtcggacgtaaaagcggaaaatcttatcgaatcggccaatctgtaaatctg
tacgtaaagaaagtagatcggtttaaacggcagatcgatttcacattatga
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