Microbacterium terricola: OAU46_05695
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Entry
OAU46_05695 CDS
T08704
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mtec
Microbacterium terricola
Pathway
mtec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OAU46_05695 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtec03400
]
OAU46_05695 (mfd)
Enzymes [BR:
mtec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OAU46_05695 (mfd)
DNA repair and recombination proteins [BR:
mtec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OAU46_05695 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UYK41134
LinkDB
All DBs
Position
1178551..1182162
Genome browser
AA seq
1203 aa
AA seq
DB search
MTIPGIVRALEQAESFRDAVASSSVDGEFSLVEGLDAPLLAAMLDRRRTAGHPPLLLAVA
PTGRRAEALGPAVGALLPGSEVLHFPAWETLPHERLSPSAEIVGRRLEVLAHIARWTGET
PLVITASVRGAIQPLAAGLTDAPVLRLVAGERGYELTEVAAQLVELAYHRVDMVSRRGEF
AVRGGILDVFPPTAPHPFRIEFFGDEVEQIRSFSVADQRSLPDDVHGIEVLPSRELLLTP
AVRERAATLTAQFPGLRGMLEKMSEGIPVEGMESLMPAVVDALVTLVDYLPQGAAIALAD
PERAVTRAITLGETNREFLEAAWNAATAGAESPIDLGAGDFLTLPALREAASRRGQVWWT
LSSFDSGEADAAAEGLFGVDAALEARAVVRVPGVAVPSFQGNVDGATAHIGQLVADGWRV
VVVSEGTGLVERARDVLAERGIAARKVDTLIDAPEGGVAHLVTCALERGFEMPDAKIAVL
TESEFYGRTISGERGVVKKLASRRRNVVDPLQLKAGDYVVHTTHGIGKFVELTQREVSSG
GRNAIKSVREYLVLEYAPSKRGHPGDKLFVPTDQLDLLSRYVGGEAPTLSKMGGSDWAQA
KGKARKAVRDIAVELVKLYSARMAAKGHAFGPDTPWQRELEEAFPFAETLDQLQTIDEIK
ADMEKPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERF
AGFPVKVKALSRFQTDKQARDVLAGLTDGTVDMVIGTHRILTEKVIFKDLGLMIIDEEQR
FGVEHKDTLKKMKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILSYVGPR
NDKQIAAAIRRELLREGQVFYVHNRVQSIQRVAADLAELVPEARIAVAHGQMGEHALEEV
VDGFWERKFDVLVCTTIVETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRARERAYAY
FLYDEMKPLSETAADRLETIAVNNDLGSGMQVALKDLEIRGAGNMLGAEQAGHIAGVGFD
LYLRMIGEAVSTFRGDDVEGPTELRLELPIQARIPETYIDSERLRLEAYQKLSAAASAAA
KDDAIDLVIDELRDRYGEPPADVEGLLAVARLRRRAAQAGLADVVAMGPNLRIAPAHLAD
SMRVRLQRLHPRAKVLAGGDALIVPLPTAGGEPLGDAQLIAWVAQLLDQLWPVKDPAPVR
AEA
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
gtgacaattcccgggatcgtgcgcgccctcgagcaggcggaatccttccgggatgccgtc
gcctcctcctccgtcgacggggagttctcgctcgtcgagggcctcgatgcccccctgctc
gcggcgatgctcgaccggcgccgcacggcggggcaccccccgctcctcctggccgtcgcc
ccgaccggtcggcgggcggaggcgctcggccccgccgtgggcgcgctgctgccggggtcg
gaggtgctccacttccccgcgtgggagaccttgccgcacgagcggctcagcccgagcgcc
gagatcgtcgggcgcaggctcgaggtgctggcgcacatcgcgcggtggacgggcgagacg
cccctcgtcatcaccgcgtccgtgcgcggggcgatccagcccctggcggcggggctgacc
gatgcgccggtgctgcggctggtcgcgggcgagcgcggctacgagctcaccgaggtcgcg
gcgcagctcgtcgagctcgcgtaccaccgcgtcgacatggtctcgcgtcgcggcgagttc
gccgtccgcggcggcatcctcgatgtcttcccgccgacggcgccgcacccgttccgcatc
gagttcttcggcgacgaggtcgagcagatccgctcgttctcggtcgccgatcagcggtcg
ctccccgacgacgtccacgggatcgaggtgctgccgagccgtgagctgctgctcaccccc
gcggtgcgcgagcgtgccgccacgctgacggcccagttccccgggctgcgcggcatgctc
gagaagatgtccgagggcattccggtggagggcatggagtcgctcatgcccgccgtcgtc
gatgctctcgtgacgctcgtggactacctgccccagggagcggcgatcgcactcgccgat
cccgagcgcgccgtgacccgcgcgatcaccctcggcgagaccaaccgcgagttcctcgag
gccgcatggaacgcggcgaccgccggtgccgagagcccgatcgacctgggcgcgggcgac
ttcctgaccctgccggcgctccgcgaagcggcgagccggcgagggcaggtctggtggaca
ctctccagcttcgattccggcgaggcggatgcggcggcggagggcctcttcggcgtggac
gccgccctcgaagcgcgcgccgtggtgcgtgtccccggcgtcgccgtgccctcgttccag
ggcaacgtcgacggggcgaccgcccacatcggccagctggtcgccgacggctggcgcgtc
gtcgtcgtgtcggagggcactggtctcgtcgagcgcgcgcgcgacgtcctcgccgagcgg
ggcatcgccgcgcgcaaggtcgacaccctcatcgatgcgccggagggcggcgtcgcccat
ctggtgacctgcgccctcgagcgcggcttcgagatgcccgacgcgaagatcgcggtgctc
accgagtcggagttctacgggcgcacgatcagcggcgagcgcggggtcgtcaagaagctc
gcctcacgtcgccgcaacgtcgtcgacccgctgcagctcaaggcgggggactacgtcgtc
cacaccactcacggcatcggcaagttcgtcgagctgacccagcgcgaggtctccagcggt
ggacgcaatgcgatcaagagcgtccgcgagtacctcgtgctcgaatacgcgccctccaag
cgcgggcaccccggcgacaagctgttcgtgccgaccgatcagctcgacctgctctcgcgc
tacgtcggcggtgaagctccgacgctgtcgaagatgggcggatccgactgggcgcaggcc
aagggcaaggcgcgcaaggccgtccgcgacatcgctgtcgagctggtgaagctgtactcg
gcgcggatggcggccaaggggcacgcgttcgggcccgacacgccgtggcagcgcgagctc
gaggaggcgttcccgttcgccgagaccctcgaccagctgcagacgatcgacgagatcaag
gccgacatggagaagccgatcccgatggaccggctcctctccggcgacgtcgggttcggc
aagaccgaggtcgccgtgcgcgccgcgttcaaggcgatccaggacggcaagcaggtcgcc
atgctcgtgccgacgaccctgctcgtcaagcagcacctcgagacgttcaccgagcggttc
gccggcttcccggtcaaggtgaaggcgctctcccgcttccagaccgacaagcaggccagg
gacgtgctggccgggctcaccgacggcacggtcgacatggtgatcgggacccaccgcatc
ctcaccgagaaggtcatcttcaaggatctgggcctcatgatcatcgacgaggagcagcgg
ttcggcgtggagcacaaggacacgctcaagaagatgaagaccaacgtcgacatcctcgcg
atgagcgcgacgccgatcccgcgcaccctcgagatggcggtcaccgggatccgcgagatg
tcgacgctgcagaccccgccggaggaccgccacccgatcctgtcgtacgtggggccgcgc
aacgacaagcagatcgccgcagcgatccgccgtgagctgctgcgcgagggccaggtcttc
tacgtgcacaaccgggtgcagtcgatccagcgggtcgccgcagacctcgccgagctcgtc
cccgaggcccgcatcgcggtggcgcacgggcagatgggcgagcacgccctcgaggaggtc
gtcgacggcttctgggagcgcaagttcgacgtgctggtgtgcaccacgatcgtcgagacg
ggcctcgacatctccaacgccaacacgatcatcatcgaccgcgccgacaagtacgggctg
tcgcagctgcaccagctgcgcggccgagtgggccgcgcccgtgagcgcgcgtacgcgtac
ttcctctacgacgagatgaagccgctgtccgagaccgccgccgaccggctcgagacgatc
gcggtcaacaacgatctgggctcgggcatgcaggtcgccctgaaggacctcgagatccgc
ggcgccggcaacatgctgggcgccgagcaggccgggcacatcgccggcgtcgggttcgac
ctgtacctccgcatgatcggcgaggcggtctccaccttccgcggggatgacgtcgagggg
ccgaccgagctccggctcgagctgcccatccaggcgcgcatcccggagacctacatcgac
agcgagcgcctgcggctggaggcgtaccagaagctgtcggcggcagcatccgccgccgcg
aaggacgacgccatcgacctggtgatcgacgagctgcgcgaccgctacggcgagccgccg
gccgatgtcgagggtctgcttgcggtcgcgcggctgcgtcggcgcgccgcgcaggcaggg
ctggccgatgtcgtggcgatgggccccaacctgcgcatcgcgccggcgcatctcgccgac
tcgatgcgcgtgcgcctgcagcgcctgcaccccagggcgaaggtcctcgccggcggcgac
gcgctcatcgtgcccctgccgaccgccggcggcgagccgctcggcgacgcgcagctcatc
gcctgggtcgcgcagctgctcgatcagctgtggccggtaaaggatccggcgccggtgcgc
gctgaggcgtag
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