Methanothermobacter tenebrarum: MTTB_10340
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Entry
MTTB_10340 CDS
T08102
Name
(GenBank) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
mtee
Methanothermobacter tenebrarum
Pathway
mtee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTTB_10340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtee03019
]
MTTB_10340
Messenger RNA biogenesis [BR:
mtee03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTTB_10340
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MTTB_10340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
KH_2
S1
RRP40_S1
KH_KRR1_2nd
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BDH79655
LinkDB
All DBs
Position
complement(960836..961522)
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AA seq
228 aa
AA seq
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MILVKDKDIVVPGEVLAENDYYPGRGTFKENNKICSSHVGLVSIRNKQISVIPLVSKYIP
KRGDVVIGEITDIRFSMWGLDINSPYSGFLPASEVFGKEKRGLENIFNIGDVLLLKVVDV
DEVKKVKLGLKGRGLGKFKGGVLVYITPSKVPRLIGKRGSMINMIKEKTRCDIVVGQNGV
VWVKGDPEMEKVARKVILMIDREAHTSGLTDRVRDTLIELIKNEKVKG
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
ttgatactagtaaaggataaagacatagtagtgccaggtgaagtgctggcagagaacgac
tattatcctggcagaggaacattcaaggagaataataagatatgttcatcccatgtgggc
ctggtatccataaggaacaaacagataagcgtcatacccctagtaagtaaatatattcca
aagaggggagatgttgtaataggtgaaataacagatataagattctcaatgtggggatta
gacataaactccccatattcaggtttcctaccagcctcagaagtttttggaaaagagaaa
aggggccttgagaacatattcaatattggcgatgttctcctcttaaaggtggttgatgtt
gacgaggttaaaaaggttaaactaggcttgaagggaagaggacttggaaaattcaaggga
ggagtcctcgtctatataacacctagcaaggtcccccgtctaatcggtaaaagagggtcc
atgataaacatgataaaggagaaaacacgctgcgatatcgtagtgggacaaaacggggtc
gtatgggtgaaaggagaccctgaaatggagaaagtggcccgtaaggtcatattaatgatt
gacagggaagcccacacttccgggctcactgatagggtaagagacaccctcatagaactt
ataaaaaatgagaaggttaaggggtga
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