Methanothermobacter tenebrarum: MTTB_12520
Help
Entry
MTTB_12520 CDS
T08102
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mtee
Methanothermobacter tenebrarum
Brite
KEGG Orthology (KO) [BR:
mtee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mtee03016
]
MTTB_12520
Enzymes [BR:
mtee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MTTB_12520
Transfer RNA biogenesis [BR:
mtee03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MTTB_12520
Prokaryotic type
tRNA splicing ligases
MTTB_12520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDH79873
UniProt:
A0ABM7YEQ2
LinkDB
All DBs
Position
1141294..1142742
Genome browser
AA seq
482 aa
AA seq
DB search
MDVKDILIKVRESVWEVPTDYKECMRVPGRIFLDEEALKDLEKGAVDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVAAFDASNGIISPGGVGFDINCGVRLLKTNLDHEEVKPKIKE
LIDTLFRNVPSGVGSKGKIRLKEGQIDEVLENGAEWAVENGYGWEEDLEHLEENGKIEDA
NATKVSEKAKKRGIPQLGSLGSGNHFLEVQRIDKIFDEKVAKAYGLETGKVTVLIHTGSR
GCGHQICSDYLKIMDKAYKKYNIKIPDRQLACAPVDSEEAREYFQAMAAAANYAWANRQM
IVHWVRESFEQVFKKPAEDMEMEILYDVAHNIAKKETHPIKGLKREVYVHRKGATRAFGP
GRKEIPSKYRKIGQPVIIPGTMGTASYVLHGTETAMKETFGSTAHGAGRKMSRAGAKRTY
RGEQVQRNLSKRGIYIRATSMPVIAEEAPGAYKDVDMVVNTSHKTGISRLVAKMIPLGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaaggatatcctgataaaagttagagaatcagtatgggaagtccccacagac
tataaagagtgcatgcgcgtccccggacgaatattcctagatgaagaagcattaaaagac
ctggagaaaggagcagttgaccaggtggcgaatgtagcatgcctaccaggcatacaaaaa
ttctcaatcggcctgccagacatacacttcggctacgggttcagtataggtggcgtggca
gcattcgacgccagcaacggcatcataagcccgggtggcgtgggattcgatataaactgc
ggagtcagactactaaaaacaaacctagaccatgaagaagtcaaaccaaaaataaaagaa
ctcatagacacactattccggaacgtcccctcaggcgttggaagcaaaggcaaaataaga
ctaaaagaaggtcaaatcgatgaagtgctagaaaacggtgcagaatgggctgttgaaaac
ggatacggatgggaagaagacctagaacacctcgaagaaaatggtaaaatagaagacgcc
aacgcaacaaaggtaagcgaaaaagcaaaaaagaggggcataccacaactaggctcacta
ggctcaggcaaccacttcctagaagtccaaagaatagataaaatcttcgacgaaaaagtc
gcgaaagcctacggcctagaaaccggaaaagtaacagtactaatccacacaggatccaga
ggatgcggccaccaaatctgctcagactacctaaagatcatggacaaagcctacaaaaaa
tacaacatcaaaataccagaccgccaactagcctgcgccccagtagactcagaagaggca
agagaatacttccaggccatggcagcagcagcaaactacgcatgggccaaccgacaaatg
atagtacactgggtgagagaatccttcgaacaagtattcaaaaaaccagccgaagacatg
gaaatggaaatactatatgacgtagcccataacatagccaagaaagaaacccacccaata
aaaggcctgaaaagagaagtctacgtccacagaaaaggggctacaagagccttcggcccg
gggagaaaagaaataccctccaagtacaggaaaataggccaaccagtcataataccaggt
acaatggggacagcatcctacgtactccacgggacagaaaccgcaatgaaagaaacattc
ggatccacagcacacggagcaggccgtaaaatgagcagagcaggtgcaaagagaacatac
cggggcgagcaagtccaaaggaacctctcaaagaggggaatatacataagggccacctca
atgccagttatcgcagaagaagcaccaggagcctacaaggacgttgacatggtcgttaac
acatcacacaaaacaggcatatcacgcctagtcgccaaaatgataccactaggcgtcgcc
aaagggtga
DBGET
integrated database retrieval system
