Micromonospora terminaliae: GCE86_29905
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Entry
GCE86_29905 CDS
T06293
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mtem
Micromonospora terminaliae
Pathway
mtem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mtem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCE86_29905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtem03400
]
GCE86_29905 (mfd)
Enzymes [BR:
mtem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCE86_29905 (mfd)
DNA repair and recombination proteins [BR:
mtem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GCE86_29905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGL50874
LinkDB
All DBs
Position
6406412..6410056
Genome browser
AA seq
1214 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADQPAGGAGRP
VLAVTATTREADDLAAALGSLLPPEQVTVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDSADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGDEADLEEVARRLTDMAYA
RVDLVTKRGEYAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGVPQLWA
PPCRELLLTPAVRERAAALAQEHPELAEILDKLAEGIPVEGMESLAPALIGADSMELLVD
CMPAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFRTLADVR
TAARALRQPWWTLAPFGLVEADAAPARQPWEDEPTEVDVTPDDAIAVTLAAQPAPLYHGE
TSRVVDDLKRWAGEGWSIALVFEGHGPAQRAVEVLRDAGLGARLTEEVPAAPAPGDLLVS
CGCLTAGFVDEASRFVLLTGNDVTGGRGTSTRDMRKMPSRRRNTIDPLELKAGDHVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHSFGPDTPWQRELEDAFPWQETP
DQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHYNTFAERMSQFPITIRQLSRFQTPKETERTLEMVGDGTVDIVIGTHRLLQSATRFKQL
GLVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTFVGAYDDRQVAASIHRELLRDGQVFYLHNRVESIDKAARRIRELVPEARVAVAHG
QMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPSDKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVSAFKGEHAEEETEVKVDLPIDAHLPHDYVGVERLRLEMYR
KLAEARDEERLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHIRFG
PLPLPDSKQLRLKRYHPDSVYKQALDQVSVPRPSTRRVGGEPLRDQALLEWCAQLLSDVL
GEPVAAQPAGAGAR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgaccccgggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcccaggtcgacggcctcgacctcacggcccccgccgcgctg
cgcccgttcgccgtcgccgcggtggccgccgaccagccggccggcggcgcgggccgtccc
gtgctcgccgtgacggccaccacccgcgaggccgacgacctggccgccgcgctgggcagc
ctgctgccgccggagcaggtgacggtcttcccgtcctgggagacgctgccgcacgagcgg
ctctcgccccgctccgacaccgtcggccggcggctggccgtgctgcgccggctggcccac
cccgactcggccgacgcccacgggcgcaccggcccgctgcgggtcgtcgtggcgcccgtc
cgttccctgctccagccgcagctcaaggggctcggtgacctggagccggtgcagctcgcg
gccggcgacgaggcggacctggaggaggtcgcccgccggctcaccgacatggcgtacgcc
cgggtcgacctggtcaccaagcgcggcgagtacgccgtgcggggcggcatcctggacgtc
ttcccgcccaccgacgagcacccgtcccgcgtcgagttctggggcgacgaggtggaggag
atccgcaccttcgccgtcgccgaccagcgcaccatcgagggcgtcccgcagctctgggcg
ccgccctgccgggagctgctgctcaccccggccgtacgggagcgggccgccgcgctcgcc
caggagcaccccgagctggccgagatcctcgacaagctggccgagggcatcccggtcgag
ggcatggagtccctcgccccggcgctgatcggcgccgactcgatggagctgctggtcgac
tgcatgccggccggcacccacgtgctgctctgcgacccggagcggatccgcacccgggcg
cacgacctcgtgcgtacctcggaggagttcctccaggccagctgggccgcggccgccgtc
ggcggccaggccccggtggacctcggcgccgcagccttccggaccctcgccgacgtccgc
acggcggcccgcgccctgcgccagccctggtggaccctcgccccgttcggcctggtggag
gccgacgccgcgccggcccgccagccctgggaggacgagccgaccgaggtcgacgtcacc
cccgacgacgccatcgccgtgaccctggccgcccagcccgccccgctctaccacggcgag
acctcccgggtcgtcgacgacctcaagcgctgggccggcgagggctggtcgatcgccctg
gtcttcgagggccacggccccgcccagcgggccgtcgaggtgctccgggacgccggcctc
ggcgcccggctcaccgaggaggtgccggccgcgcccgcgcccggcgacctgctggtctcc
tgcggctgcctgacggccggcttcgtcgacgaggcgtcccggttcgtgctgctcaccggc
aacgacgtcaccggcggccggggcacctccacccgcgacatgcgcaagatgccgagccgg
cggcgcaacaccatcgacccgctggagctcaaggcgggcgaccacgtggtgcacgagcag
cacggcatcggccgctacgtcgagctggtgcagcgcacggtcaacggcgcgagccgggag
tacctggtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccggctcttcgtc
cccaccgaccagctcgaccagctctcccgctacgtcggcggcgagcagcccaccctgcac
aagatgggcggctcggactggcagaagtccaaggcccgggcccgcaaggcggtccgcgag
atcgccgcgcagctcatccagctctacgccgcccgcaaggcgtcgaaggggcactcgttc
ggcccggacaccccgtggcagcgggagctggaggacgccttcccctggcaggagacgccc
gaccagctcgccgccatcgaggaggtcaagcgggacatggagcagaccgtccccatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtccgggcggcgttc
aaggcggtgcaggacggcaagcaggtggccgtgctggtgcccaccaccctgctggtgcag
cagcactacaacaccttcgccgagcggatgagccagttcccgatcaccatccggcagctg
tcccgcttccagacgccgaaggagaccgagcggacgctggagatggtcggcgacggcacc
gtcgacatcgtcatcggcacccaccggctgctccagtcggccacccggttcaagcagctc
ggcctcgtcatcatcgacgaggagcagcgcttcggcgtcgagcacaaggagcacctgaag
acgttgcgcgcctcggtcgacgtgctggccatgtcggccaccccgatcccgcgcaccctg
gagatggcgatcaccggcatccgggagatgtccaccatcgccaccccgccggaggagcgg
cacccggtgctgaccttcgtgggggcgtacgacgaccggcaggtggccgcctcgatccac
cgcgagctgctccgcgacgggcaggtcttctacctgcacaaccgggtcgagtcgatcgac
aaggcggcccgccggatccgcgagctggtgcccgaggcccgggtcgcggtggcgcacggc
cagatgggcgaggaggcgctcgagaaggtgatggtcggcttctgggagaaggagttcgac
gtcctcgtctgcaccacgatcgtcgagtccggcatcgacatcccgaacgccaacacgctc
atcgtcgagcgggccgatctgctcggcctggcccagctgcaccagatccgcggccgggtg
ggccggggccgggagcgggcgtacgcgtacttcctctacccgtcggacaagccgctcacc
gagaacgcgcacgagcggctggccaccatcgcgcagcacaccgagctgggcgccggcatg
tacgtggccatgaaggacctggagatccggggcgccggcaacctgctcggcggcgagcag
tccgggcacatcgagggcgtgggcttcgacctctacgtccggatggtcggcgaggcggtc
tcggcgttcaagggtgagcacgcggaggaggagaccgaggtcaaggtcgacctgccgatc
gacgcgcacctgccgcacgactacgtcggcgtggagcggctgcgcctggagatgtaccgc
aagctggccgaggcccgcgacgaggagcggctgcgcgaggtggtcgccgagatgaccgac
cgctacggcgagccgcccgcgccggtgcagaacctggtggcggtggcccggttccggctg
ctggcccggcgctacggcctcaccgacgtgtcgatgcagggcaagcacatccggttcggc
ccgctgccgctgcccgactcgaagcagctccgcctcaagcgctaccacccggactcggtc
tacaagcaggcgctcgaccaggtcagcgtgccccggccgagcacccgccgggtcggcggc
gagccgctgcgcgaccaggcgctgctggagtggtgcgcccagctcctctccgatgtgctg
ggcgagccggtcgcggcgcagccggccggggcgggggcgcggtga
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