Mycolicibacter terrae: 4434518_00669
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Entry
4434518_00669 CDS
T05465
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mter
Mycolicibacter terrae
Pathway
mter03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mter00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4434518_00669 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mter03021
]
4434518_00669 (rpoC)
03400 DNA repair and recombination proteins [BR:
mter03400
]
4434518_00669 (rpoC)
Enzymes [BR:
mter01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
4434518_00669 (rpoC)
Transcription machinery [BR:
mter03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
4434518_00669 (rpoC)
DNA repair and recombination proteins [BR:
mter03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
4434518_00669 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF8728
Motif
Other DBs
NCBI-ProteinID:
SNV57824
LinkDB
All DBs
Position
1:712354..716304
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDTEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADVRRKVRDGGEREMRQLRDRAQRELDRLDNIWDTFVKLAPKQLIVDETV
YRELVDRYGEYFTGAMGAESIQKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDTGEYT
PAAKDRPESGVYSSPAEAIMAVDRGALSVRAKIKVRLDQLRPPAAVETELFGENGWRPGG
AWMAETTLGRVMFNELLPTGYPFVNKQMHKKVQAVIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDSYEERADKVEKQFQRGALNHDERNEALVEIWKE
ATEEVGQALRDHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIMVE
LAEVAADGSLIRDPFIETSAYARTLAVDAVDEKGNVVIERGHDLGDPSIEALLGAGISAI
KVRSVLTCATGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVAGRVQLEEGEKFYKITIVPDDGGEEVVYDKL
PKRQRLRVFKHEDGSERLLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQQ
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFETENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA
GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgagctccgcatcggcctggcgaccgcggaggacatc
cggcaatggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgactcgcgccaaggtgcggcgtgagcggatgggccatatcgaactggccgccccg
gtcacccacatctggtacttcaagggcgtgccgtcccggttgggttacctgctggacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacgtcatcaccgccgtcgac
accgagatgcgccacaacgagctgtccacgctggaagccgagatggtcgtcgagaagaag
gccgtcgaggaccagcgcgacgccgacctggaggcgcgtgcccagaagttggaggccgac
ctggccgagctggaggccgagggcgcgaaagccgatgtgcggcgcaaggttcgcgacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgggcccagcgtgagctggaccgcctcgac
aacatctgggacaccttcgtcaagctggctcccaagcagctgatcgtcgacgagaccgtc
taccgggagctggtcgaccgctacggcgagtacttcaccggtgcgatgggcgcggagtcg
atccagaagctgatcgagaccttcgacatcgacgccgaggccgagtcgctgcgcgacacc
atcaagaacggcaaggggcagaagaagcttcgcgccctcaagcggctcaaggtggtcgcc
gcgttccagcagtcgggcaactccccgatgggcatggtgctcgacgcggtgccggtgatc
ccgccggagttgcgcccgatggtgcagctcgacggtggccggttcgccacgtccgacctc
aacgacctgtaccgccgggtcatcaaccgcaacaaccggttgaagcgactgatcgacctc
ggtgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtcgacgcg
ctgttcgacaacggccgtcgcggccggccggtcaccggcccgggcaaccgtccgctgaag
tcgctgtccgatctgctcaagggcaagcagggccggttccggcagaacctgctcggtaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggtccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcgactg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtggagcggcagcgg
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctcaaccgt
gcacccacgctgcaccgcctgggtatccaggccttcgagccgcagctggtggagggcaag
gccattcagctgcacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgagcgccgaggcgcaggccgaggcccgcatcctgatgctg
tcttccaacaacatcctgtcgccggcctcgggtcgtccgctggccatgccgcgactggac
atggtgaccggtctgtactacctgaccaccgaggtcgaaggggacacaggcgaatacact
ccggccgccaaggaccgcccggagagcggcgtgtactcctcgccggccgaggcgatcatg
gccgtcgaccgcggtgcgctctcggtgcgggccaagatcaaggtgcggctggaccagctg
cggcccccggccgcggtcgagaccgagctgttcggcgagaacggctggcgtccgggcggt
gcctggatggccgagaccacgctgggccgggtgatgttcaacgagctgctgccgaccggg
tatccgttcgtgaacaagcagatgcacaagaaggttcaggccgtcatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcccagaccgtggacaagctcaaggacgccggc
ttctactgggccacccgttcgggggtcacggtctcgatggccgacgtgctggtgccgccg
cgcaagaaggagatcttggactcctacgaggagcgcgccgacaaggtcgaaaagcagttc
cagcgtggcgcgctcaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgaggaggtgggtcaggcgctgcgtgaccactacccggccgacaacccgatcatc
accatcgtcgattccggtgcgacgggtaacttcacccagacccggacgctggccggcatg
aagggtttggtgaccaaccccaagggtgagttcatcccgcggccgatcaagtcctcgttc
cgtgagggcctgacggtgctggagtacttcatcaacacccacggcgcccgaaagggcttg
gcggacaccgcgttgcgtaccgccgactcgggctacctgacccgtcgtctggtggacgtg
tcgcaggacgtgatcgtgcgcgagcacgactgcggcaccgagcgcggcatcatggtggag
ctggccgaggtcgctgcggacggatcgctgattcgcgacccgttcatcgagacctcggcg
tacgcccgcacgttggcggtcgacgcggtcgacgagaagggcaacgtcgtcatcgagcgc
ggccacgacctcggcgacccgtcgatcgaggccctgctgggcgccggtatctcggcgatc
aaggtgcgctcggtgctgacctgtgccaccggaaccggcgtgtgcgcgacctgctacggc
cggtcgatggccaccggcaagctggtcgacatcggcgaggccgtcggcatcgtcgcggcc
cagtccatcggtgagcccggtacccagctgaccatgcgcaccttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccacgggtgcaggaactgttcgaggcccgcatcccg
cgcggcaaggcgccgatcgccgacgtcgccggacgggtgcaactcgaagagggcgagaag
ttctacaagatcacgatcgtgccggacgacggtggcgaggaagtggtctacgacaagttg
cccaagcgtcagcggctgcgggtgttcaagcacgaggacggctccgagcggttgctggcc
gacggtgaccacgtcgaggtcggccagcagctcatggagggttcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctcgtcaaggaggtccagcag
gtctaccgggcccagggtgtgtcgatccacgacaagcacatcgaggtgatcgtccggcag
atgctgcgccgggtgaccatcatcgactcgggcgccacggagttcctgcccggttcgctg
accgagcgggccgagttcgagacggagaaccgtcgggtggtggccgagggcggcgagccc
gcggccgggcgtccggtgctgatgggtatcaccaaggcgtcgctggccaccgactcgtgg
ctgagcgcggcgtcgttccaggagaccacccgcgtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctgcagggcctcaaggagaacgtgatcatcggcaagctgatcccggcc
ggcaccggcatcaaccggtaccgcaacatcgcggtgcagccgaccgaggaggcccgggcc
gctgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggcgccgcc
accggtgccgcggtgccgctggacgactacggttacagcgactaccgctag
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