Mycolicibacter terrae: 4434518_01170
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Entry
4434518_01170 CDS
T05465
Symbol
deaD
Name
(GenBank) cold-shock DEAD-box protein DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mter
Mycolicibacter terrae
Pathway
mter03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mter00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4434518_01170 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mter03019
]
4434518_01170 (deaD)
03009 Ribosome biogenesis [BR:
mter03009
]
4434518_01170 (deaD)
Enzymes [BR:
mter01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4434518_01170 (deaD)
Messenger RNA biogenesis [BR:
mter03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
4434518_01170 (deaD)
Ribosome biogenesis [BR:
mter03009
]
Prokaryotic type
rRNA helicases
4434518_01170 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
SNV63533
LinkDB
All DBs
Position
1:1228314..1230038
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AA seq
574 aa
AA seq
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MSSPDTPPGSDSHPPAATFADLQIHPSVLQAVADVGYETPSAIQAATIPALLAGSDVVGL
AQTGTGKTAAFAIPILSRIDTASKATQALVLAPTRELALQVAEAFGRYGAHLPRVNVLPI
YGGASYTVQLSGLKRGAQVVVGTPGRVIDHLERGSLDLSHLDYLVLDEADEMLAMGFAED
VERILADTPEYKQVALFSATMPSAIRRITTRYLHDPVEVTVEAKTTTAENISQRYIEVAG
PRKMDALTRVLEVESFEAMIVFVRTKQATEEVAEKLRSRGFSASAINGDIAQVQRERTIA
ALKNGNVDILVATDVAARGLDVERISHVVNYDIPHDTEAYVHRIGRTGRAGRSGAALLFV
SPRERHLLKAIERATRQKLTESALPTVEDVNAQRVAKFADSITATVSAPGTDVFRSLVEE
YSREHNVPMADIAAALALQARDGEAFLMEPEPPAAERRSREKFDRPDRKDGRKGAPKEGF
ATYRIAVGKRHKVAPGAIVGALANEGGLHRSDFGNISIRVDHSLVELPAKLSGKTLKALE
HTRIQGQLINLRRERPSGRPDRHGDGGTHRKRMG
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgagctcccctgatacccctcccgggtccgattcccacccacccgccgcgacctttgct
gacctgcagatccacccttcggtgctgcaggccgtcgccgacgtcggctacgagacgccc
tcggcgattcaggccgccaccatcccggcgttgctggccggctccgacgtggtcggcttg
gcccagaccggtaccggcaagaccgcggcgttcgccattccgatcctgtcccgcatcgac
accgccagcaaggccacccaggcgctggtgctcgcacccacccgggagctggccctacag
gtcgccgaggcgttcgggcgttacggcgcgcatctgccgcgggtcaacgttctgccgatc
tacggtggcgcgtcctacacggtgcagctgtccgggctcaaacgcggcgcccaggtggtg
gtcggcaccccgggccgggtcatcgaccatctggaacgcggcagcctggacctgtcgcac
ctggactatctggtgctcgacgaggccgacgagatgctggccatgggtttcgccgaggat
gtcgagcgcattctggccgacaccccggaatacaagcaggtggcgctgttctcggcgacg
atgccgtcggcgattcgccggatcaccacccgctacctgcatgacccggtcgaagtcacc
gtcgaggcgaaaaccaccacggcggagaacatctcccagcgttacatcgaggtcgccggt
ccccgcaagatggatgccctgacccgggtgctcgaagtcgagtccttcgaggcgatgatc
gtgttcgtccgcaccaagcaggccaccgaggaggtcgccgaaaagctgcgctcccgaggg
ttttccgcgtcggcgatcaacggcgacatcgcccaggtgcagcgcgagcggaccatcgcc
gcgctgaagaacggcaacgtcgacatcctggtggccaccgatgtcgcggcccgcggcctg
gatgtcgagcgcatctcacacgtggtcaactacgacatcccgcacgacaccgaggcttac
gtgcaccgcatcggccgcaccgggcgggccgggcggtcgggggccgcgctgctgttcgtc
agcccccgggaacgccacctgctcaaggcgatcgagagggcgacccgccagaagctcacc
gagtcggcgttgcccacggtcgaggacgtcaacgcccagcgggtggcgaagttcgccgac
tcgatcaccgccaccgtcagcgcacccggcaccgatgtgttccgcagcctggtcgaggag
tacagccgcgaacacaacgttccgatggccgacatcgccgccgccctggcgttgcaggcc
cgcgacggcgaggcgttcctgatggaacccgaaccgcctgcggccgaacgtcgttcgcgg
gagaagttcgaccggcccgatcgcaaggatggccgcaagggcgctccgaaagagggattc
gccacctaccggatcgcggtcggcaagcggcacaaggtcgccccgggcgcgatcgtcggg
gcactggccaacgagggcggcctgcaccgcagcgacttcggcaacatcagcatcagggtg
gaccactcgctggtggaactgcccgccaagctgtcgggcaaaacgctcaaggcgctggaa
cacacccgcatccagggccagttgatcaatctgcgccgcgagcgcccgtccggcaggccc
gaccgccacggcgacggggggacgcaccggaaacggatgggatga
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