Micrococcus terreus: R3I42_00700
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Entry
R3I42_00700 CDS
T09505
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mteu
Micrococcus terreus
Pathway
mteu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mteu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R3I42_00700 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mteu03400
]
R3I42_00700 (mfd)
Enzymes [BR:
mteu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R3I42_00700 (mfd)
DNA repair and recombination proteins [BR:
mteu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R3I42_00700 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOO97734
LinkDB
All DBs
Position
150720..154415
Genome browser
AA seq
1231 aa
AA seq
DB search
MSTAAPRPLSGLFPVLLQDRAVSAAATSAARSGADRTPDLEISLPDGARPAITALLAGAC
RGEGDPDSSAGAAGQGLERPSVLLLVTATAREADDLAAELGCWMDPDTVAHLPSWETLPH
ERLSPRSDTVGTRLAVLRRLVHPGADGKPPLAVVTAPIRSVLQPLVQGLGDLEPVHLRVD
EDRDFDEVVQALSDAAYSRVDMVSRRGEYAVRGGLLDVFPPTEDHPLRIEFFGDTVEQMR
YFSVADQRSLQDTTEDGTGHPQALYAPPCRELLLTESVQRRARELQSSMPGAVDMLEKIA
EGIAVEGMESLAPVLADGMVPLVDLLPEGSLTVLVEPEKIRHRADDLLATNEEFLTAAWA
TAGQGGAAPVDMAQVFGEGQSGAGGFATLAETRNQSLARHQGWWQMTSLGADTELLADAS
SLRTALREPQGFSADVEAMIAHVSQRTSEGWQCVVVTDGPGPARRLAELFGEAGITAVSV
DRVSEEPAPGQVVITTAVAGHGFAAPETKVALLTEQDLFGRHRTAASRAGTRTLARKRRN
AVDPLSLTEGDYVVHSQHGIAKFVELQRRKVAGAAGGAAADSYREYLVLEYAPSKRGAPG
DRLFVPTDQLDQISRYVGGETPSLSKMGGSDWSNTKSKAKRATKQIAGELIRLYSARMAS
RGHSFAPDTPWQRELEESFPFIETPDQLTTVNEVKKDMEATVPMDRLVSGDVGFGKTEVA
VRAAFKAVQDGKQVAVLVPTTLLARQHHETFTERFAGFPVQVAALSRFQSAKESKEIMAG
MADGSVDVVIGTHRLLSQGVQFKDLGLVVIDEEQRFGVEHKEALKKLRTNVDVLAMSATP
IPRTLEMSLTGIRETSTLATAPEERHPVLTYVGPNTDQQVTAAIRRELMREGQVFFVHNR
VSSIDKVAAHIRELVPEARVEVAHGKMGESRLEQIMVDFWEKRFDVLVSTTIIETGLDIA
NANTLIIDRADAYGLSQLHQLRGRVGRGRERAYAYFLYSPEKALSETALERLKAVAAHNE
LGSGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMVGEAVADFKGEADTGPAEVK
VELPVNAHLPHDYVPGERLRLEAYRNLAQASDDAAVDAVVEELQDRYGALPEPAQSLVAV
ARFRNVARAAGVTEVMLMGPAIKFAPAADLPESRVMRLQRMYKGAQIKPALNAVLIPRPK
TAPVGGRDLTDLPLLEWAAQVVRAIYSEDVA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
gtgagcactgccgccccccgtcccctctccgggctgttccccgtcctgctgcaggaccgg
gccgtcagtgctgccgcgacctccgcggcacggtccggtgccgaccgcaccccggacctg
gagatcagccttcccgacggcgcccggccggccatcacagctctgctcgccggagcgtgc
cgaggggaaggcgatccggactcctccgccggggcagccgggcagggcctggaacggccc
tccgtgctgctgctggtcaccgccaccgcgcgcgaagccgatgacctggccgctgagctg
ggctgctggatggacccggacaccgtggcccacctgccctcctgggagaccctgccgcat
gagcggctctcaccccgctcggacaccgtgggcacccgcctggccgtgctgcgccgactg
gtccatcccggtgccgacggcaagccaccactggccgtggtcaccgcccccatccgctcc
gtgctccagccgctggtgcagggactgggagacctggagccggtgcacctgcgcgtggac
gaggaccgcgacttcgacgaggtggtccaggccctgtccgacgccgcctactcccgcgtg
gacatggtctcccggcgcggtgagtacgccgtgcgcggcggcctgctggacgtcttcccg
cccaccgaggaccacccgctgcgcatcgagttcttcggggacaccgtggagcagatgcgc
tacttctctgtggcggaccagcgctccctgcaggacaccaccgaggacggcaccgggcac
ccgcaggccctctacgccccgccgtgccgcgagctgctgctgaccgagtccgtccagcgc
cgcgcccgggagctgcagtcctccatgcccggcgccgtggacatgttggagaagatcgcc
gaggggatcgccgtggagggcatggaatcccttgcaccggtgctggcggacgggatggtc
ccactggtggacctgctgccggagggttcgctcaccgtgctggtggagccggagaagatc
cggcaccgtgccgatgaccttctggccaccaacgaggagttcctcaccgccgcctgggcc
accgctggccagggtggcgctgcccccgtggacatggcccaggtgttcggcgaggggcag
tccggggccggcggcttcgccaccctggccgagacccgcaaccagtcgctggcccggcac
cagggctggtggcagatgacctccctgggagcggacaccgagctgctggccgacgcctcc
agcctgcgcaccgccctgcgtgaacctcagggcttctccgcagacgtggaggcgatgatc
gcccatgtctcccagcgcacctccgaaggctggcagtgcgtggtggtcaccgacggtcct
ggtccggcccggcgtctggccgagctgttcggggaggccggcatcaccgccgtcagtgtg
gaccgggtctccgaggagcccgctcccggtcaggtggtcatcaccaccgcggtggccggc
catggcttcgccgctccggagaccaaggtcgccctgctcaccgaacaggatctgttcgga
cgtcaccgcactgcggccagccgggcagggactcgcaccctggcacgcaagcggcgcaac
gccgtcgaccctctctccctcaccgagggggactacgtggtccactcccagcacggcatc
gccaagttcgtggagctgcagcggcgcaaggtggccggtgcggctggcggtgccgccgcc
gactcctaccgggagtacctggtcctggagtacgccccgtccaagcgcggagccccgggg
gaccggctgttcgtccccaccgaccagctggaccagatctcccgctacgtgggcggggag
acccccagcctgtccaagatgggcggctcggactggtccaacaccaagtccaaggccaag
cgcgccaccaagcagatcgccggggagctgatccggctctactccgcgcggatggcctcc
cggggacactccttcgccccggacaccccgtggcagcgggagctggaggagtccttcccg
ttcatcgagaccccggaccagctcaccaccgtcaacgaggtcaagaaggacatggaggcc
accgtccccatggaccggctggtctccggcgacgtcggcttcggcaagaccgaggtggcc
gtacgggccgcgttcaaagcggtgcaggacgggaaacaggtggccgtgctggtgcccacc
accctgctggcccggcagcaccacgagaccttcaccgagcggttcgccggattcccggtg
caggtcgcggcgctctcccggttccagtccgccaaggagtccaaggagatcatggccggg
atggccgacggctccgtggacgtggtgatcggcacccaccggctgctctcccagggggtg
cagttcaaggacctgggcctggtggtgatcgacgaggagcagcgcttcggcgtggagcac
aaggaggcgctcaagaagctgcgcaccaacgtggatgtgctggccatgtccgccacgccc
atcccgcgcaccctggagatgtccctgaccggcatccgcgagacctccaccctggccacc
gcgccggaggagcgccacccggtgctgacctacgtggggccgaacacggaccagcaggtc
accgccgcgatccgccgtgagctgatgcgcgaggggcaggtgttcttcgtgcacaaccgc
gtctcctcgatcgacaaggtcgccgcgcacatccgcgaactcgtgccggaggcccgggtg
gaggtggcccacggcaagatgggcgagtcccgcctggaacagatcatggtggacttctgg
gagaagcggttcgatgtgctggtctccaccaccatcatcgagaccggactggacatcgcc
aacgcgaacaccctgatcatcgaccgtgccgacgcctacgggctgagccagctgcaccag
ctgcgcggccgggtgggccgcggccgcgagcgcgcctacgcgtacttcctgtacagcccg
gagaaggcgctgagcgagaccgccctggagcgcctcaaggccgtggccgcgcacaacgag
ctcggctcgggcatgcagctggccatgaaggacctggagatccgcggtgccggcaacctg
ctgggcggcgagcagtccgggcacatcgccggggtgggcttcgacctctatctgcgcatg
gtgggtgaggccgtggccgacttcaagggtgaggcggacaccggtccggccgaggtcaag
gtggagctgccggtcaacgcccacctgccccacgactacgtgccgggggagcgactgcgc
ctggaggcctaccgcaatctggcccaggcctcggacgacgccgccgtggacgccgtggtg
gaggagctgcaggaccgctacggcgccctgcccgagcccgcccagtccctggtggcggtg
gcccggttccgcaatgtggcccgcgccgctggtgtcaccgaggtgatgctgatgggaccg
gccatcaagttcgcccccgccgccgatcttcccgagtcccgcgtgatgcgtctgcagcgg
atgtacaagggtgcccagatcaagccagccctgaacgccgtgctcatcccgcgccccaag
accgcacccgtgggcggcagggacctcaccgacctgcccctgctggagtgggcggcccag
gtggtccgtgccatctacagcgaggacgtggcctga
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