Micrococcus terreus: R3I42_13360
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Entry
R3I42_13360 CDS
T09505
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mteu
Micrococcus terreus
Pathway
mteu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mteu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R3I42_13360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mteu03019
]
R3I42_13360
03400 DNA repair and recombination proteins [BR:
mteu03400
]
R3I42_13360
Enzymes [BR:
mteu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R3I42_13360
Messenger RNA biogenesis [BR:
mteu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R3I42_13360
DNA repair and recombination proteins [BR:
mteu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
R3I42_13360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
NAD_binding_10
HEM4
MGS
SWI2_SNF2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WOO97452
LinkDB
All DBs
Position
2892915..2895104
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AA seq
729 aa
AA seq
DB search
MEHLNTRDAVTPDPAPDLHEEALQVLRRLVGREDAVFHEGQFEAIEALVSGRRRALVVQR
TGWGKSAVYFVASLLLRARGAGPTLIVSPLLALMRDQVSAAARAGVRAESINSANATDWD
DVRQRLDEDTVDVLLVSPERLNNPRFRDEQLSELTRRMGLLVIDEAHCISDWGHDFRPDY
RRIRDLIARLPGRGEARVPVLATTATANQRVVTDVVEQLGVDSDDDVFVLRGPLARASLR
LGVLRMPSPASRLAWLLSHLNELPGSGIVYALTVSAAEDTAQALKDAGYAVAAYTGRTDP
EQRAELEQALKDNQVKALVATSALGMGFDKPDLGFVVHLGAPSSPVSYYQQVGRAGRGVD
HADVLLLPGTEDREIWQYFATTSMPDEHRARAVLEELERAGGALSVPALETRVDLRRTPL
ELLLKVLAVDGAVERVGGGWRRTDQPWSYDGERYGRVAQARVHEQNLMLDYENTTGCRME
FLARVLDDPQSAPCGRCDTCAGPWYPTGVGEQARAAADSSLRRVGVPVEPRTMWPSGMDR
LGVQVKGRIPAEEQCGGGRAVARLTDLGWGGRLRELFSDREDSAGDGPIDSDLLQAAVQV
LAQWGWTERPIAVVSVPSRRRPQLVRSFAEGIAQIGQLPYLGELSVRGHGPLTGPGGNSA
YRLASVWDQFAVPETMAEQLQSAPGSGRQGPVLLVDEMADSRWTLTVTGRALRQAGADGV
LPLVLALAG
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggagcacctgaacacgcgcgacgcagtgaccccagacccggccccggaccttcacgag
gaggcgctgcaggtgctgcgcaggctggtcggacgggaggacgccgtcttccatgagggg
cagttcgaggcgatcgaggcactggtctcgggccgccgcagggcactggtggtccagcgg
actggctggggcaagtctgcggtgtacttcgtggcctccctgctgctgcgggcccgcggt
gctggacccacgttgatcgtctcgcctctgctggcgctgatgcgggaccaggtctcggcg
gcggcccgtgcgggagtgcgcgctgagtcgatcaactcagccaacgccaccgactgggac
gacgtgcgccagcgactcgatgaggacaccgtggatgtcctgctggtctcgccggaacgt
ctgaacaatccccggttccgagacgagcagctgtctgagctgactcgacgcatgggcctg
ctggtgatcgacgaggcccactgtatctccgactggggacacgacttccgtccggactac
cggcgcatccgcgacctgatcgcccgtcttcccggccgcggtgaggcccgtgtcccggtc
ttggcgacgacggccaccgccaaccagcgcgtggtcaccgacgtggtggaacagctggga
gtggactccgatgacgacgtcttcgtcctgcgcggacccctggcgcgcgcctcgctgcgc
ctgggcgtgctgaggatgcccagccccgccagcaggctggcctggctgctcagccacctg
aacgagctgccgggttccgggatcgtctatgcactgaccgtgtctgcggcggaggacacc
gcccaggcgctcaaggacgccggatacgcggtggccgcgtacaccggacgcaccgaccct
gagcagcgcgccgagctggagcaggcgctgaaggacaaccaggtcaaggcgctcgtggcc
acctccgccctgggcatggggttcgacaagccggacctgggattcgtggtccacctgggc
gccccgagctcgccggtctcctactaccagcaggtcggacgtgccggccgcggcgtggac
cacgccgacgtgctgctgctcccgggcacagaggaccgggagatctggcagtacttcgcc
accacttccatgccggacgaacaccgcgcgcgggccgtgctggaggagctggagcgggcg
ggaggagcgttgagcgtgccggccctggagacccgcgtggacctgcgccgcaccccgttg
gagctgctgctgaaggtgctggccgtggacggtgcggtggagcgcgtcggcggtggatgg
cgccggacggatcagccgtggagctacgacggcgagcggtacgggcgcgtggcccaggcc
cgggtccacgaacagaacctgatgctcgactacgagaacaccaccggatgccggatggaa
ttcctggcgcgagtcctcgacgacccgcagtcggccccctgcggacggtgcgacacctgc
gctgggccctggtaccccacgggagtgggtgagcaggcccgggcggcggcggacagttca
ctgcggcgagtcggagtgccggtggagccccgcaccatgtggcccagcggcatggaccgg
ctcggggtccaggtcaagggacgcattccggcagaggagcagtgcggcggggggcgggcc
gtggcgcgactgaccgatctgggctggggcgggcggctgcgcgagctgttctccgaccgg
gaagacagtgccggtgacggacccatcgactccgatctgctgcaggccgcggtccaggtg
ctcgcccaatggggctggactgaacgtccgatcgccgtggtctccgtgccgtcacgccgc
cggccgcagctggtgcgctccttcgccgagggcatcgcccagatcggtcagctgccctac
ctgggggagctctcggtacgcggccacggaccgctcaccggtcccggcggcaacagcgcg
taccgcttggcctcggtgtgggaccagttcgccgtcccggagaccatggccgaacagctg
cagtcggcaccgggatcgggtcgtcagggaccggtgctgctggtggacgagatggccgac
agccgatggacgctcaccgtcaccggacgcgcattgcgccaggccggggcggacggcgtg
ctgcccctggtgctcgccctggccggatga
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