KEGG   Microvirga terrae: HPT29_001135
Entry
HPT29_001135      CDS       T09145                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mtez  Microvirga terrae
Pathway
mtez03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mtez00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HPT29_001135 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mtez03021]
    HPT29_001135 (rho)
   03019 Messenger RNA biogenesis [BR:mtez03019]
    HPT29_001135 (rho)
Transcription machinery [BR:mtez03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     HPT29_001135 (rho)
Messenger RNA biogenesis [BR:mtez03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HPT29_001135 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA_25 NACHT AAA S1CSD-TOTE-2 ATPase_2 DUF6360 Fungal_virus_P2_C AAA_14
Other DBs
NCBI-ProteinID: UVF19791
UniProt: A0ABY5RU00
LinkDB
Position
238064..239329
AA seq 421 aa
MREIKLQDLKSKTPTELIAFAEELEVENASTMRKQELMFAILKQLAAREVEIIGAGVVEV
LQDGFGFLRSADSNYLPGPDDIYVSPSQIRKFGLRTGDTVDGPIRGPKEGERYFALLKVN
TINFEDPEKIRHKVHFDNLTPLFPHERFNLEIADPTRKDFSPRIIDIVSPIGKGQRALIV
APPRTGKTVLMQNVAQSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRTFPA
IDITRSGTRKEELLVPSDTLKKMYVLRRILNPMGTVDAIEFLLDKLRQTKSNQEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgagggaaatcaaacttcaagacctgaaatccaagacgcccaccgaactcatcgcgttc
gccgaggagctcgaggtcgagaacgcgagcaccatgcgcaagcaggagctcatgttcgcg
atcctcaagcagctggcggcgcgcgaggtggagatcatcggcgccggcgtcgtcgaggtg
ctccaggacggcttcggcttcctgcgctcggccgattccaactacctgcccggccccgac
gacatctatgtctcgccctcgcagatccgaaagtttggcctgcgcaccggcgacacggtg
gacggcccgatccgcggcccgaaggaaggcgagcgctatttcgcgctgctcaaggtcaac
accatcaatttcgaggatcccgagaagatccggcacaaggttcatttcgacaacctgacg
ccgctcttcccgcacgagcgcttcaatctcgagatcgccgatccgacccgcaaggatttc
tcgccgcggatcatcgacatcgtgtcgcccatcggcaagggccagcgcgccctcatcgtg
gcgccgccgcgcaccggcaagaccgtgctgatgcagaacgtggcgcagtcgatcaccacc
aaccatcccgagtgctacctcatcgtgctgctcatcgacgagcgcccggaggaggtgacc
gacatgcagcgctccgtgaagggcgaggtcgtggcctccaccttcgacgagccggcgacc
cgccacgtgcaggtggccgagatggtgatcgagaaggccaagcgccttgtggagcacggc
cgcgacgtggtcatcctgctcgattcgatcacccgcctgggccgcgcctacaacacggtg
gtgccgtcctccggcaaggtgctcaccggcggtgtcgacgccaacgccctgcagcgcccg
aagcgcttcttcggtgcggcgcgcaacatcgaggagggcggttcgctcaccatcatcgcg
accgcgctgatcgacaccgggtcgcgcatggacgaggtgatcttcgaggagttcaagggc
accggcaactcggaaatcatcctggaccgcaaggtcgccgacaagcgcaccttcccggcc
atcgacatcacgcgctcggggacccgcaaggaggagctgctggtgccgagcgacacgctc
aagaagatgtacgtgctgcgccgcatcctcaacccgatgggcacggtcgacgccatcgag
ttcctgctcgacaagctgcgccagaccaagtccaaccaggaattcttcgactcgatgaac
acctga

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