Microvirga terrae: HPT29_007210
Help
Entry
HPT29_007210 CDS
T09145
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mtez
Microvirga terrae
Pathway
mtez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPT29_007210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtez03019
]
HPT29_007210
03009 Ribosome biogenesis [BR:
mtez03009
]
HPT29_007210
Enzymes [BR:
mtez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPT29_007210
Messenger RNA biogenesis [BR:
mtez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPT29_007210
Ribosome biogenesis [BR:
mtez03009
]
Prokaryotic type
rRNA helicases
HPT29_007210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
UVF20907
LinkDB
All DBs
Position
complement(1519198..1521033)
Genome browser
AA seq
611 aa
AA seq
DB search
MPFPKTNPSLERALVDKGYNDPTPVQAAVLQPDALDRDLLVSAQTGSGKTVAYGLAMAST
LLGDSERFEAPREPLALIIAPTRELALQVNRELIWLYGPAGARVVSCVGGMDVRREQRAL
ADGCHIVVGTPGRLRDHLERGRLDTSKMRVVVLDEADEMLDLGFREDLEFILDATPEERR
TLLFSATLPKNIIALARRYQREAHRVDTLVENEPHGDIEYRALRIAPNEVEHAVVNVLRF
YESRGAMVFCHTREAVRHLHASLIERGFAAVAISGELTQNERSNALQSLRDGRARVCVAT
DVAARGIDLPDLGLVIHFDLPNDHETLLHRSGRTGRAGRKGVCVMLVPYTRRRKAERLVD
MAGVDVTWAGPPSADEIRLRDRDRLMQDPIFAEEVTEDDLAMAQALLAQRSAEEIANALV
RFHRARLPAPEEIVDTGPDREPRQRKDKRERQEERLRGFKDKGRDSSEGGFERSSEDMVW
FRMSVGRRNNADPRWLLPIICRLGHVTKKEIGSIKIFDRETKFEIVKSHAPKFASAVRKT
NDEDIRIEPADAGPGKLRDTKARDGKPWDRPKGNGPKDKGGPPAHKKQKDSRGPKDGKRA
KSKERSSDKRP
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgccttttcccaaaacgaatcccagccttgagcgcgccctcgtcgacaaaggctacaac
gatccgactcccgtccaggctgccgtcctgcagccggacgcactcgatcgcgacctcctc
gtgtcggcccagaccggctccggcaagacggtggcgtacggcctcgccatggcgtcgacc
ctcctcggcgacagcgagcgtttcgaggccccgcgggagccgctggctctgataatcgcc
ccgacccgcgagctcgccctccaggtcaaccgggagctcatctggctctacgggccggct
ggcgcgcgggttgtctcctgcgtcggcggcatggacgtgcgccgggagcagcgcgcgctc
gccgatggctgccatattgtggtcggcaccccgggccgcctgcgcgaccacctggagcgt
ggacgcctcgacacctcgaagatgcgcgtcgtcgtgctcgacgaggctgacgagatgctc
gatctcggcttccgggaggacctggagttcatcctggacgcgaccccggaggagcgccgc
acgcttctgttctccgccacgttgcccaagaacatcatcgccctggcccggcgctatcag
cgcgaggcccatcgcgtcgataccctcgtggagaacgaaccgcacggcgacatcgagtac
cgcgccctccggatcgcacccaatgaggtggagcacgcggtcgtcaacgtgctgcgcttc
tacgaaagccgcggcgccatggtgttctgccacacccgcgaggccgtgcggcatctgcac
gccagcctgatcgagcgcggtttcgcggccgttgccatttccggcgaactgacccagaac
gagcgcagcaatgcccttcagtccctgcgcgacgggcgggcccgggtctgtgtcgccacc
gacgtggcggcgcgcgggatcgaccttccggatctcggcctcgtgatccatttcgatctg
cccaacgatcacgagacgcttctgcaccgcagcggccgcacgggccgtgcaggccgcaag
ggcgtctgcgtcatgctcgtgccctacacccgccgccgcaaggcggagcgcctcgtggac
atggcgggcgtcgacgtgacctgggccggtccgccctcggccgacgagatccgcctgcgg
gaccgggaccggctgatgcaggatccgatcttcgctgaagaggtgacggaagacgatctc
gccatggcgcaggcgctgctcgctcaacggtcggcggaggagatcgcgaacgctctggtt
cgtttccatcgcgcgcgtctgcccgcaccggaagagatcgtcgatacgggtccggaccgc
gaaccccgccagcgcaaggacaagcgcgagcggcaggaagaacgcctgcgcggcttcaag
gacaaaggacgggattcgtccgaaggaggcttcgagcgctcctccgaggacatggtatgg
ttccgcatgagtgtcgggcggcgcaacaacgccgatccccgctggctgctgccgatcatc
tgccgcctcggccatgtgacgaagaaggagatcggctcgatcaagatcttcgaccgcgag
accaaattcgagatcgtcaagtcacacgcgccgaaattcgcgtccgccgtgcgcaagacg
aacgacgaggatatccgcatcgagccggccgatgccggcccaggcaaactccgcgacacg
aaggcacgcgacggcaagccgtgggaccgcccgaagggcaacggtcccaaggacaagggc
ggccctcccgcgcacaagaagcagaaggacagccggggccccaaggacggaaagcgcgcg
aagtccaaggaacgctcgtcggacaagcgcccctga
DBGET
integrated database retrieval system
