Microvirga terrae: HPT29_008400
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Entry
HPT29_008400 CDS
T09145
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mtez
Microvirga terrae
Brite
KEGG Orthology (KO) [BR:
mtez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HPT29_008400 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtez03400
]
HPT29_008400 (ligD)
Enzymes [BR:
mtez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HPT29_008400 (ligD)
DNA repair and recombination proteins [BR:
mtez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HPT29_008400 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UVF21127
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All DBs
Position
complement(1795677..1797254)
Genome browser
AA seq
525 aa
AA seq
DB search
MAKLAAYRAKRDFTKTSEPAGKASRRRGASFVVQKHDASRLHYDFRLELDGVLKSWAVAK
GPSLVTGEKRLAVHVEDHPLDYGDFEGTIPEGQYGGGTVLLWDRGTWEPDGDPHEGYDKG
RLTFRLEGEKLHGTWHLVRMAKRPRERQESWLLIKAEDAYARTEDDPDVLDEKPLSVKSG
RSLEQIAPDRPAKRSTTRKAPATKAVSPNAEKTTKRASAKAKPSDRSIEVAGVTLTHPDR
VLWEDQGVTKQELAAFYAGISDWLLPHLVDRPLTLIRCPGGAEKKCFIQRHSWVGMSPFI
HSDTVEDGTTKQEILTVRDIRGVVALVQSGVLEMHVWGATLADLERPDRLVFDFDPGEGV
DWPAVIAGARAVRERLKALGLESFVKTTGGKGLHVVVPLKPRAPWKDALAFTRDIAEAMA
ADEPDRYTTTSAKQEREGRIFIDYLRNNREASAVAPYSTRSRPGAPVATPVTWEELSSDL
KPNGFTVENLSNRLKALKRDPWADMGKADQVLPERARSKRAPRKK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagctcgcagcctatcgcgccaagcgcgacttcactaagacctccgagccggcg
ggcaaggcctcccggcgccggggggcgtccttcgtcgtccagaagcacgacgcctcccgt
ctgcactacgatttccgcctggagctcgacggcgtcctgaagagctgggctgtggccaag
ggaccgagcctggtcacgggcgagaagcgccttgcggtccatgtggaggatcacccgctc
gattacggcgacttcgagggcaccatcccggagggccagtacggcggcggcaccgtcctg
ctgtgggatcgcgggacctgggagccggacggcgatccgcacgagggctacgacaagggc
cgcctcaccttccgcctcgagggagagaagctgcacgggacgtggcacctcgtccgcatg
gccaaacgcccacgcgaacgacaggaatcctggctgctgatcaaagccgaggacgcctat
gcacggaccgaggatgatccggatgtcctcgacgagaagccgctgtcggtgaaatcgggc
cgctcgctggagcagatcgcgcccgaccgcccggccaagcgttccacgacgagaaaagca
ccggcgacaaaggcggtatcgccgaatgctgaaaagaccacgaagcgagcctctgcgaaa
gccaagccatccgaccgttcgatcgaagtggcgggcgtgaccctcacccatcccgaccgc
gtgttgtgggaagaccagggagtgacgaagcaggaactggcggccttctatgccggcatc
tccgattggctgctgccgcatctggtcgaccgaccgctgacgctcatccgctgcccggga
ggggcggagaagaagtgcttcatccagcgtcactcctgggtcggcatgagtcccttcatt
cattcggacacggtggaggacgggacgaccaagcaggagattctgacggtccgcgacatc
cggggcgtcgtggctctcgtgcaatcgggcgtgctggagatgcacgtgtggggcgcgacc
ctggccgatctggaacggcccgaccgcctcgtcttcgatttcgatcccggtgaaggcgtg
gactggcccgcggtgatcgcgggagcgcgcgccgtccgcgagcgcctgaaggcgctgggg
ctcgaaagcttcgtcaagacgaccggcggcaagggccttcacgtggtcgtgccgctcaag
ccgcgggcgccgtggaaggatgctctcgcgttcacgcgggacatcgccgaagccatggcg
gccgacgagccggaccgctacacgaccacgtccgccaagcaggagcgcgagggacgcatc
ttcatcgattacctgcgcaacaatcgcgaggcctcggcggtcgcgccctactccacccgc
tcgcggcccggcgctccggtcgccacgccggtgacctgggaggagctgtcgtcggatctc
aagcccaacgggttcacggtcgaaaacctgagcaatcgtctcaaagcgctcaagcgggat
ccctgggccgacatgggcaaggccgatcaggtgctgccggagcgcgcacggtcgaagcgc
gcgccgcggaagaagtag
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