Microvirga terrae: HPT29_011930
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Entry
HPT29_011930 CDS
T09145
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mtez
Microvirga terrae
Brite
KEGG Orthology (KO) [BR:
mtez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mtez03016
]
HPT29_011930
Enzymes [BR:
mtez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HPT29_011930
Transfer RNA biogenesis [BR:
mtez03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HPT29_011930
Prokaryotic type
tRNA splicing ligases
HPT29_011930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
Motif
Other DBs
NCBI-ProteinID:
UVF21769
UniProt:
A0ABY5RZP9
LinkDB
All DBs
Position
complement(2514279..2515448)
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AA seq
389 aa
AA seq
DB search
MTAKTRIFGEHDEKTIRQLDRCMEVGSAAKGVLCADGHLGYAHPIGGVIAYEEHVSISGV
GFDIACGNMAVRLDTRYEEVAAQAGRILSDIGRAISFGIGQKNAVTVDHELFESPLWEEA
GVRDLKKLASGQLGTVGSGNHYVDLFEDEEGYVWIGVHFGSRGLGHKITTKHLALVGAKD
GMEVDPALVHQDSDLGRSYIAGVKLGGLYAYAGREWVVERVRRIIGGRVTDTVHNHHNFV
WRESHGGREYWVVRKGATPAFPRQRGFVGGSMGDNAVILHGIEGPESADSLYSTVHGAGR
LFGRMDAKGKKNKAGEWVRPPRFTRDEMDAWLREKGILLRGGDVDESPMVYRRLDDVLAY
HKGTIGIEHTLRPFAVAMAGPGEFDPYKD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
ttgacggcaaagacccgaatctttggcgagcatgacgagaagacgatccggcagctggac
cggtgcatggaggtcgggagcgccgccaaaggcgtgctctgcgcagacggacaccttggc
tacgcgcatccgatcggcggcgtgatcgcctacgaggagcatgtctccatcagtggggtc
gggttcgacatcgcatgcgggaacatggccgtccggctcgacacccgctacgaggaggtc
gccgcccaggcggggcgcatcctgtctgacatcggacgcgccatcagcttcggcatcggg
cagaagaacgccgtcacggtggaccatgagttgttcgaatcccccctctgggaggaggcc
ggcgtccgagacctcaagaagctggcatcgggacagctcgggacggtgggttccggcaat
cattacgtcgacctattcgaagacgaggaaggttatgtctggatcggggtgcatttcggc
tccagagggcttggccacaagatcaccacgaaacaccttgccttggtcggggcgaaggac
gggatggaggtcgatcccgccctcgtccatcaggatagcgatctcgggcgcagctacatt
gccggcgtgaagctcggcgggctctatgcctatgccgggcgcgaatgggtggtcgagcgc
gtgcgtcggatcatcggcggccgggtcacggacacggttcacaaccaccacaacttcgtc
tggcgggagagccatggcggcagggagtactgggttgtccgcaagggcgcgacgccggca
ttcccgcggcagcgcggtttcgtcggcggatccatgggggacaacgcggtcatcctgcat
ggaatcgagggtccggagagcgccgacagcctctattcgaccgttcatggggcaggacgc
ctcttcggccgcatggacgcgaagggcaagaagaacaaggcgggagaatgggtgcgccct
ccccggttcacccgcgacgagatggatgcttggctgcgcgaaaagggcatcctcctgcgc
ggaggcgacgtggacgagagcccgatggtctaccggcgcctcgacgatgtactcgcctat
cacaagggcacgatcggaatcgagcacacgctccggccctttgccgtcgcgatggccggc
cctggcgagttcgatccctacaaggactga
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