Microvirga terrae: HPT29_012200
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Entry
HPT29_012200 CDS
T09145
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mtez
Microvirga terrae
Pathway
mtez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPT29_012200 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtez03019
]
HPT29_012200 (rnr)
03016 Transfer RNA biogenesis [BR:
mtez03016
]
HPT29_012200 (rnr)
Enzymes [BR:
mtez01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPT29_012200 (rnr)
Messenger RNA biogenesis [BR:
mtez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPT29_012200 (rnr)
Transfer RNA biogenesis [BR:
mtez03016
]
Prokaryotic type
tRNA degradation factors
HPT29_012200 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
TetR_C_14
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
UVF21814
UniProt:
A0ABY5RZT9
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All DBs
Position
complement(2568767..2571088)
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AA seq
773 aa
AA seq
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MPKRPKADQPSLPSREEVVSFISHAQGKVGKREIAQRFGIKGDDRIWLKQILKDLEDEGI
LDRRGKTMHKAGQLPPVVLADITRRDQDGELIAVPTEWDEEEHGSIPTIIILSPRKPRPG
MPVAGVGDRALLRVDPLKPGDIHRYSGRVIKIIAKKQAQVLGLFRALPEGGGRLVPVDKK
ARDQELQIRPGDEGEAKDGDLVSVAVVKHGRFGLPTAKVKERLGTIQSEKAISLIAIYAH
NIPNDFPKAVLDEAASAKPVTLDRREDWRTLPLVTIDPPDAKDHDDAVHAVPDDDPNNEG
GIILTVAIADVAAYVRPGSAMDREAQERGNSVYFPDRVVPMLPERISNDLCSLRPREDRP
ALAVRMVIGPDGRKIRHSFHRIMMRSAEKLSYQQAQAAIDGRPDDVTKPILDTILKPLWA
GYELVKKARDIREPLFLDLPERKIVLNPDGTVDRVFVPERLEAHRLIEEFMILANVAAAE
SLEKADSDLIYRVHDEPSLEKMRSLSEVLASIGLKLPSQGALKPELFNRILRSVADTEHQ
LFINEVVLRSQSQAEYSAENYGHFGLNLRRYAHFTSPIRRYADLIVHRALIAANKLGRDG
LPPDTTRAELIEISAKISAAERRAMAAERETIDRLIAHFLADRIGATFSGQISGVSKAGL
FIKLNETGADGFVPAATIGDDYYRYDEKSHSMRGDDTGETYRLGDKVEVKLVEAAPVAGA
LRFEILTKGRFTGRSGPSRKGAKRPSRGAKAGAGPSPRGRSPTRVKVKRRERG
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
ttgcccaaacgtccgaaagccgaccagccgtcccttccctcccgcgaggaggtggtgtcc
ttcatctcccatgcgcagggcaaggtcggcaagcgggagatcgcacagcgcttcggcatc
aaaggcgacgaccggatctggctcaagcagatcctcaaggacctggaggatgagggtatc
ctcgaccgacggggcaagacgatgcacaaggccggccagctccccccggtcgttctggcg
gacatcacccggcgggaccaggacggcgagctgattgccgtcccgaccgaatgggacgag
gaggagcacggctccatcccgacgatcatcatcctgtccccgcgcaagccgcgccccggc
atgcccgtcgcgggcgtgggcgaccgggctctgctgcgggtcgacccgctcaagcccggc
gacatccaccgctattccggccgcgtgatcaagatcatcgccaagaagcaggcgcaggtg
ctcggcctcttccgagccctaccggaaggcggaggccggctcgtgccggtcgacaagaag
gcgcgcgaccaggaactccagatcagacctggcgacgagggcgaggcgaaggacggcgac
ctggtctccgtggcggtggtgaagcacgggcgcttcggccttcctacggccaaggtgaag
gagcgcctgggcacgatccaatcggagaaggccatcagcctcatcgcgatatacgcccac
aacattcccaacgacttcccgaaagcggtgctggacgaggccgcgagcgcgaagcccgtg
accctggaccgtcgcgaggactggcgcaccctgcccctggtcacgatcgacccgcctgat
gcgaaggaccatgacgatgcggtccatgccgtcccggacgatgatccgaacaatgagggc
ggcatcatcctgacggtcgccatcgccgatgtggcggcctatgtgcgccccggctcggcc
atggaccgggaggcgcaggagcgcggaaactcggtctatttccccgaccgtgtcgtgccg
atgctgccggagcgtatctccaacgacctgtgctcgttgcggccgcgtgaggaccgccct
gccctcgcggttcgcatggtgatcggtcccgacggtcggaagattcggcacagcttccac
cggatcatgatgcgctcggcggagaagctgtcctatcagcaggcccaggcggccatcgac
ggccggcctgacgacgtgacgaagcccatcctcgacacgatcctcaaacctctctgggcc
ggctacgagctggtcaagaaagcccgtgatatccgcgagccgctgttcctcgacctgccc
gagcgcaagatcgtgctcaatcccgacggcaccgtggaccgcgtgttcgttccggaacgg
ctcgaggcgcacaggctcatcgaggagttcatgatcctcgccaacgtggccgcggccgag
agcctggaaaaggccgattccgatctgatctaccgggtccacgatgagccttcgctcgag
aagatgcggtcgctgagcgaggtgctcgcctcgatcgggctgaagctcccgagccagggg
gcactgaagcccgaactgttcaaccgcatcctgcgcagcgtcgcggacacggagcaccag
ctcttcatcaacgaagtggtgctccgctcccagtcccaggccgaatactcggcggagaac
tacggccatttcggcctgaacctccggcgctatgcccatttcacctctccgatccgccgg
tatgctgacctgatcgtccaccgggcgctgatcgccgcgaacaagctgggccgggatgga
ttgccgcctgacacgacccgggccgaactgatcgagatcagcgccaagatctcggccgcg
gagcgtcgcgccatggcggcggagcgtgagacaatcgaccgcctgatcgcgcacttcctt
gccgaccggatcggcgccacattctccggacagatctcgggggtgtcgaaggcgggcctc
ttcatcaagctgaacgagaccggagcggacggcttcgttccggcggccacgatcggcgac
gactactaccgctatgacgagaagagccattccatgcgcggagacgacacgggggaaacc
tatcgtctcggcgacaaggtggaggtgaagctggtcgaggcggcgcccgtcgccggcgcg
ctgcgcttcgagatcctcacgaaggggcgcttcaccggccggagcggcccgtcgcgaaag
ggcgcgaagcgcccctcgcgcggagcaaaggcgggtgccgggccgtccccgaggggacgc
tccccgacgcgcgtgaaggtcaagcggcgcgaacgcggctga
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