Microvirga terrae: HPT29_017665
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Entry
HPT29_017665 CDS
T09145
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mtez
Microvirga terrae
Pathway
mtez03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtez00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPT29_017665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtez03019
]
HPT29_017665
Enzymes [BR:
mtez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPT29_017665
Messenger RNA biogenesis [BR:
mtez03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPT29_017665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVF18329
UniProt:
A0ABY5RN58
LinkDB
All DBs
Position
complement(3750311..3751792)
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AA seq
493 aa
AA seq
DB search
MTLFTDFGLAQPILKALAAEGYEKPTPIQAQTIPYAMDGRDVCGIAQTGTGKTAAFALPI
LHRLNANPKPRKPKSPRVLVLSPTRELSGQIADSFKAYGRNLRLTTEVVFGGVTISRQEK
ALAQGVDVLVATPGRLIDLVDRRSLSLRDIEILVLDEADQMLDLGFIHALKRIVTLLPKE
RQSLFFSATMPKTISTLADSFLRDPAHVAVTPVATTAERVEQSVMFVQTNRKQVLLETLL
RDPSIDRVLVFTRTKHGADKVVRGLDKAGIAGAAIHGNKSQPQRERALAGFRDGSCRVLV
ATDIAARGIDVEGVTHVINYDLPNVPESYVHRIGRTARAGATGLAISFCNDEEKAYLKDI
EKLTRLKVPVMPLPEGLPAAPAAGEASEQRREQPQRGRPAPHARGHQGHGQPRSADPNAE
RGPKRRRGRGGKPGGTAQPQGGQPTGNQQRPAQGQRPAQGQRPAQGKPASNRQDGRRGDG
AQVAWLEKSPRRR
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttgacactcttcaccgatttcggattggcccagccgatcctgaaggccctggcggccgag
ggctatgagaagcccaccccgatccaggcccagaccattccctatgccatggacggccga
gacgtctgcggcatcgcccagaccggcaccggcaagacggccgccttcgcactgccgatc
ctccaccgcctgaacgcgaacccgaagccgcgcaagcccaagagcccccgcgtgctcgtg
ctcagcccgacccgcgagctctcgggccagatcgccgacagcttcaaggcctatggccgg
aacctgcgcctcaccacggaagtggtgttcggcggcgtcaccatctcccgtcaggagaag
gcgctcgcccagggcgtcgacgtgctcgtggccacgccgggccgcctgatcgacctggtg
gaccgtcggtccctgtcgctccgtgatatcgagatcctcgtcctcgacgaggccgaccag
atgctcgatctcggcttcatccatgccctgaagcgcatcgtgaccctgctgccgaaggag
cgccagagcctgttcttctcggccaccatgccgaagacgatctcgacgctggccgattcc
ttcctgcgcgacccggcccatgtggccgtcaccccggtggcgacgaccgcggagcgcgtg
gagcagagcgtcatgttcgtgcagaccaaccgcaagcaggtgctgctcgaaacgctcctg
cgcgatccgtccatcgaccgcgtcctcgtcttcacccgcaccaagcacggcgcggacaag
gtggtgcgcggcctcgacaaggccggcatcgccggagcggccattcacggcaacaagtcc
cagccgcagcgcgagcgtgcgctcgccggcttccgcgacggctcctgccgggtgctggtg
gcgactgacattgccgcgcgtggcatcgacgtcgagggcgtgacgcacgtcatcaactac
gacctgccgaacgtgccggagtcctacgtccaccgcatcggccgcacggcccgcgctggc
gcgacgggtctcgccatctcgttctgcaacgacgaggaaaaggcgtatctcaaggacatt
gagaagctgacgcggcttaaggttccggtcatgccgctgccggagggcctgccggccgcg
ccggcggccggcgaggcgtccgagcagcgtcgcgagcagccgcagcgcggacgtccggca
ccccatgcccgcgggcatcagggccacggccagccgcgcagcgccgacccgaacgccgaa
cgcggtccgaagcgccgtcgtggacgcggcggaaagccgggtggcaccgctcagccgcag
ggcggacagccgaccgggaatcagcagcggcccgcgcagggccagcgcccggcccagggc
caacgacccgctcagggcaagccggcctccaaccgccaggatggacgccgcggtgacgga
gcccaggtggcgtggctcgaaaagagcccccgccgccggtaa
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