Methanothermobacter thermautotrophicus: MTH_1318
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Entry
MTH_1318 CDS
T00009
Name
(GenBank) conserved protein
KO
K07573
exosome complex component CSL4
Organism
mth
Methanothermobacter thermautotrophicus
Pathway
mth03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mth00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTH_1318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mth03019
]
MTH_1318
Messenger RNA biogenesis [BR:
mth03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTH_1318
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MTH_1318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
A2L_zn_ribbon
Zn_ribbon_TiaS
OB_RRP5_4th
ECR1_N_2
HypA
DmmA-like_C
Zn_Tnp_IS91
Defensin_5
Zn_ribbon_RPAB4
DUF5817
Motif
Other DBs
NCBI-ProteinID:
AAB85796
UniProt:
O27373
LinkDB
All DBs
Position
complement(1188693..1189262)
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AA seq
189 aa
AA seq
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MKVKSGDMVFPGDFLAVSEEVLPSEGTYDEDGKIKSLVVGEVSRDDRNKSIKVISKLNTP
PTLKRGSRVIGEVIDVRGQRALVRIHSIKGNRRALATYFVGGVHVSQARKGYLSKLTDAF
RIGDIVEARVTKIMGLDGIDLQTSGRDLGVIKAMCTRCRHFMEVNGRDEVRCPNCENREK
RKLSVNYEG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaaatctggggatatggtttttcccggagattttttggctgtaagcgaagag
gtcctcccctctgaggggacctacgatgaggatggtaagataaaatcccttgtcgttgga
gaggtttcaagggatgaccggaataagagcataaaggtaatatcaaagctgaacacacca
ccaacacttaaaaggggttcaagggtcattggagaggtcattgatgtaaggggtcagcgg
gcccttgtgaggatacacagcatcaagggcaacaggagagcccttgcaacatacttcgtt
ggaggagtccacgtttcacaggcaaggaagggctacctttcaaagctaacagacgccttc
aggataggggacatcgtggaggcaagggtcacaaagatcatgggcctcgatggcatagat
ctacagacatcaggccgtgaccttggggttatcaaggcaatgtgcacccgctgcaggcac
ttcatggaagtgaacggcagggacgaggtcaggtgcccgaactgtgaaaaccgggaaaaa
aggaagctatcagtgaattatgaaggttaa
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