Methylophaga thalassica: VSX76_02260
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Entry
VSX76_02260 CDS
T09743
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mtha
Methylophaga thalassica
Pathway
mtha02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VSX76_02260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtha03021
]
VSX76_02260
Transcription machinery [BR:
mtha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VSX76_02260
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
GerE
Sigma70_ECF
HTH_23
HTH_28
HTH_10
HTH_11
PhyR_sigma2
HTH_40
HTH_Tnp_ISL3
HTH_VMAP-M9
HTH_Mga
HTH_24
Terminase_5
SAM_CEP-1_C
Motif
Other DBs
NCBI-ProteinID:
WVI85449
LinkDB
All DBs
Position
1:118896..119411
Genome browser
AA seq
171 aa
AA seq
DB search
MNHPSSAIDYLYVDNLSWLRQFIYRRMGCNELAADLAQDTFLRLLRKPQEFDSQEGIRAW
LSRVAQGLCVDHWRHQEVERTWLETLAAQPEDHALSAEQQAILVETIYELDSMLSRLPEK
IMQTFLLSQLHGKTYREISSEMGISERTVKNYMAKAMSLCLRVQLELETSQ
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatccaagctctgccattgactatttatatgtagataatctcagctggctgaga
caatttatatatcggcgcatgggctgtaacgaattggctgctgatttagcacaagacacc
tttctacggctattacgcaagccccaagagttcgatagtcaggaaggaattcgcgcttgg
ctgagtcgggttgctcagggtttatgtgtggatcattggcgccaccaggaagtggaaaga
acctggttggaaacccttgccgcgcagcccgaagatcatgctttatctgccgaacaacag
gccattctcgttgagacgatatatgaacttgattccatgctgagcaggctgccagaaaaa
attatgcagacctttctgttatcgcagttgcacggcaaaacctaccgcgaaatttcttct
gaaatgggcatctcagaacgaaccgtaaaaaattatatggcaaaggcaatgtcactttgc
ttacgtgttcaacttgaattagaaaccagccaataa
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integrated database retrieval system
