Methylophaga thalassica: VSX76_04860
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Entry
VSX76_04860 CDS
T09743
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VSX76_04860 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtha03021
]
VSX76_04860 (rpoC)
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_04860 (rpoC)
Enzymes [BR:
mtha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VSX76_04860 (rpoC)
Transcription machinery [BR:
mtha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VSX76_04860 (rpoC)
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VSX76_04860 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WVI85949
LinkDB
All DBs
Position
1:654746..658945
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKQQTQPEEFDAIRIGLASPKMVRSWSFGEVKKPETINYRTFKPEREGLFCCK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRISLFLDMTLRDIERVLYFEAFIVVDPGMTPLEKGQLLSDETFLQAVEEYGDEFDARM
GAEAVQQLLRNINVAKEIETIREEIDGTNSETKIKKLSKRLKLMEAFHESGNKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNRMPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LKLHQCGLPKKMALELFKPFIYGKLERAGLATTIKAAKKMVEREGPEVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RSLMMATNNILSPANGEPVIIPSQDVVLGLYYMTRDRVNEKGEGSVFADLSELRRAYDNR
VVSLHAKVMVRLEETDITLPEPEQTRRIRVETTVGRAILFSIVPKGLPFSVVDRAMTKKA
IGDLINTCYRRLGLKDTVIFADQLMYLGFTQATQSGASVGADDMVIPVEKASILAKAEAE
VEEIASQYASGLVTDGERYNKIIDIWSRTNDQVAKAMMDGIGKDTVTDAEGNSVEQVSMN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDLVVVEEDCGTTLGLNMSPIIEGGDVVEPLGERVL
GRVVAQDLKSSDGERLVLAAGEMIDEAAVNKLESEGIDEVMVRSAITCESRYGVCASCYG
RDLGRGHQINVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAADNSVALKYKGNIRY
HNIKYVQNSAGKFIAVSRSGELHLIDENGRERERYKIPYGAEMTVADNEAVDAGQIVANW
DPHTHPVVTEVAGVVQLSDLVEGVTVDKTVDEVTGLTSFIVREPKQRSSSAKDMRPMVRL
TDANGSDVFIPGTDIPAMYFLPGGAIVRVSDGQEVEIGDIVARIPQESSKTRDITGGLPR
VADLFEARKPKDPALMAEISGTVSFGKETKGKQRLIITPKEGEPYEELIPKWRHISVFEG
EHIEKGEMLVDGPEDPHDILRLKGVLALANYMVSEVQEVYRLQGVKINDKHIEVIVRQML
RKVEIDAVGDSKFLKGEQVEYDRVLDANDELRAKEKVECTFTPLLLGITKASLATESFIS
AASFQETTRVLTDAAVTGKSDNLRGLKENVIVGRLIPAGTGLAYHKERQRRRQEALGESP
VTKSSAVTEDKDEEIKEVS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttgcttaatttgttaaagcaacaaactcagccagaagaatttgacgccatt
cgcatcggccttgcctcacctaaaatggtgaggtcatggtcatttggcgaagtcaaaaaa
ccagaaaccatcaactaccgtacttttaaaccggaacgtgaaggtttgttttgctgcaaa
atttttggtcctgtaaaagactacgaatgcttatgcggtaaatacaaacgcttaaaacac
cgtggcgtcatttgtgaaaaatgtggcgttgaagtgactgttgccaaagtacgtcgtgaa
cgtatggggcacattgaactcgctagcccggttgctcatatctggttcctgaaatcatta
ccatcacgtatttcattatttttggatatgacactgcgtgatattgagcgtgtattgtat
tttgaagcgttcatcgtcgtcgatcccggtatgacgcctttagaaaaaggtcagttgctg
tctgatgagaccttcctgcaggcagttgaagagtacggtgatgaatttgatgcgcgtatg
ggggcggaagctgtacagcagttattgcgcaacattaacgtcgccaaagaaattgaaact
atccgtgaagaaattgatggcactaactcagaaacaaaaatcaaaaaactgagcaaacgc
ctgaaactgatggaagcgtttcatgagtcgggtaacaaaccagaatggatggttatggaa
gtgcttccagtactgccacctgatctgcgtcctctggttcctcttgatggtggtcgattt
gcgacatcggatctaaatgatttatatcgtcgtgtgatcaaccgtaataaccgtctgaaa
cgtttattagatttgaatgcacctgacattatcgttcgtaatgaaaaacgtatgctgcaa
gagtcagtagacgcattactagataacggtcgtcgtggacgtgctatcacaggcacaaac
cgcatgccattgaaatctctggcagacatgattaaaggtaagcagggtcgtttccgtcag
aacttgttaggtaagcgtgttgactattcaggccgttcagttatcgtggttggcccatat
ctgaaattacaccagtgtggtctgcctaagaaaatggcattggaattattcaaaccattt
atctatggcaagcttgaacgtgcaggtctggcgacaacgattaaagctgctaagaaaatg
gtagaacgcgaaggacctgaagtttgggatatcctggaagatgtgattcgtgaacacccg
gtcatgcttaaccgtgcaccgactctgcatagattaggtattcaagcgtttgaaccatta
cttattgaaggtaaggcgattcagcttcacccattagtttgtagtgcgtttaatgctgac
tttgacggtgaccaaatggcggttcacgtaccattatcattagaagcacagttagaagcg
cgttcactgatgatggcaaccaataatattctgtctccagctaacggtgagccagtcatc
attccatcacaggacgtggtattgggtctttattatatgactcgcgaccgtgtgaacgag
aaaggtgaaggcagtgtttttgcggacctttcagaattgcgtcgtgcttacgataacaga
gtcgtttcgctgcatgcgaaagtaatggttcgtctggaagaaactgatattactttgcct
gaacctgagcaaacgcgtcgcattcgtgtagaaacaacagtcggtcgtgcgattctattc
agcatcgtgccaaaaggtctgccgttctcagttgttgatcgtgcgatgacgaaaaaagcg
attggtgatcttattaatacttgctatcgtcgtttaggtcttaaagatactgttatcttt
gctgatcagttgatgtaccttggcttcactcaggcaacacagtctggtgcatctgttggt
gcagacgatatggttatccctgtcgaaaaagcatcaatccttgcgaaggctgaagcagaa
gttgaagaaattgcatctcaatatgcctctggtttagtaactgatggtgaacgttacaac
aagattatcgatatctggtcacgcactaatgaccaagttgcaaaagcgatgatggacggt
attggtaaagatacagttaccgatgctgaaggtaattcagttgaacaagtctccatgaac
tccatctacatgatggctgattccggtgctcgtggttctgcagcgcagattcgtcagctt
gctggtatgcgtggtctgatggctaaaccagatggttcaatcatcgagacacctatcacg
gcgaacttccgtgaaggtctggacgttttgcagtactttatttcgactcacggtgctcgt
aaaggtttggccgatacagcattgaaaacagcaaactcaggttatttgacacgtcgtttg
gtcgatgtttctcaagacttggttgttgttgaagaagattgcggcacaacattaggttta
aacatgtcacctatcattgagggtggtgatgttgttgaaccacttggtgaacgtgtactt
ggacgtgttgtagcacaagacctgaaatcatctgatggtgagcgtcttgtactcgctgct
ggtgaaatgattgatgaagcagcggtcaataaacttgaaagcgaaggtattgacgaagtt
atggtacgtagtgcgattacttgtgaatctcgctatggtgtctgtgcatcgtgttatgga
cgtgacttaggtcgtggccatcaaatcaacgttggtgaagcggtaggtgttatcgctgct
cagtcaatcggtgaacctggtacacagttaacgatgcgtaccttccacatcggtggtgcg
gcatcaagaacagctgccgataactctgttgccttgaaatataaaggtaatatccgttac
cacaacattaaatatgttcaaaactctgccggtaagtttattgccgtttcacgttcaggt
gaattacacctgattgatgaaaatggccgtgagcgtgagcgctataagatcccttatggt
gctgaaatgacagtagctgacaatgaagctgtcgatgcaggtcaaatcgtggctaactgg
gatccgcatacgcatccggttgtaaccgaggtagcaggtgttgttcagctaagtgatctg
gttgaaggtgtgacagttgataaaactgtcgacgaagtgacaggtctgacgagcttcatt
gttcgtgaacctaaacaacgtagcagttctgcaaaagacatgcgtcctatggttcgcctg
acggatgcaaatggtagcgatgtatttattccagggacagatattcctgcaatgtacttc
ctgccaggtggtgcgattgttcgtgtcagtgatggacaagaagttgaaatcggtgacatc
gttgcacgtattcctcaggaaagtagtaaaactcgtgatatcacgggtggtctgccacgt
gttgctgacctgttcgaagcacgtaaaccaaaagatcctgctttgatggcagaaatcagc
ggtacggtcagctttggtaaagaaacaaaaggtaaacaacgtctgattatcacgcctaaa
gaaggcgaaccgtatgaagagttgattccaaaatggcgtcatatctctgtgtttgaaggt
gagcacattgagaaaggtgagatgttagtagatgggccagaagacccacatgacatcttg
cgcttgaaaggtgtcttggcattagctaactatatggtgagcgaagtacaggaagtttac
cgtctacaaggcgttaaaattaacgataagcatattgaagtgattgtgcgtcagatgctg
cgtaaagttgaaattgatgctgttggtgatagtaaattcctgaaaggcgagcaagttgag
tacgatcgcgtacttgatgctaatgatgaactgcgtgctaaagaaaaagtggaatgtacg
tttacaccgctgctgttaggtattacaaaagcctcactggcaacggagtcattcatttca
gcagcatcgttccaggaaactacacgagtgctgacggatgccgctgtgacaggtaagagc
gataacttacgtggcttgaaagagaacgttattgttggtcgtctgattcctgccggtact
ggtcttgcgtatcataaagagcgccagcgtcgtcgtcaggaagcattaggtgagtcaccg
gtgactaaatcatcagcagtaactgaagataaagacgaagaaatcaaagaggtttcataa
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