Methylophaga thalassica: VSX76_05015
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Entry
VSX76_05015 CDS
T09743
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VSX76_05015 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mtha03021
]
VSX76_05015 (rpoA)
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_05015 (rpoA)
Enzymes [BR:
mtha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VSX76_05015 (rpoA)
Transcription machinery [BR:
mtha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VSX76_05015 (rpoA)
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VSX76_05015 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Glutaminase
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
WVI85979
LinkDB
All DBs
Position
1:675486..676469
Genome browser
AA seq
327 aa
AA seq
DB search
MTTYTSQFLKPRIVDIQKFSDTRTRLVLEPLERGFGHTLGNALRRILLSSMEGAAVVEAQ
IDGVVHEYSAIDGVQEDVLDILLNMKGIAVKLHEGNEVVLTLNKEGVGPVTAADIQLPHN
VEIVNPEHVIANLTGGSLSITFKVTKGRGYSAANTRNVGEDEDRAIGQLYLDASFSPVRL
VTYSVESARVENRTDLDKLIIDVETDGTLEAEDSIKYAATILSDQLTSFVDFTVIEESVS
EPKQPAVDPALLQAIDDLDLTVRSANCLKAENIYYVGDLIQRTEMELLKTPNLGKKSLTE
IKEVLASKGLSLGMHLDNWPPASLEQK
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttacacgagtcaatttctaaaaccaaggattgttgatatccaaaagtttagt
gatacgcgtacacgtcttgtacttgagccgttagagcgtggctttggtcatactttaggt
aatgcactgcgcagaattttattgtcttcaatggaaggcgccgcagttgttgaagcccag
attgatggcgttgtacatgagtactcggctattgatggcgttcaagaagatgttttagat
attcttcttaacatgaaaggcattgcggtcaagcttcatgaaggtaatgaagtcgtcttg
actcttaacaaagagggtgttggccctgtaaccgcagctgatattcagttaccgcataat
gtcgagattgttaatcctgaacatgtgattgcaaatctgactggtggtagcctttctatt
acctttaaagtaacaaaaggccgtggttactctgcagcaaatactcgtaatgtgggtgag
gatgaagatcgtgctatcggtcaactgtatcttgacgcatcattcagtcctgtacgtctt
gttacttacagtgtagaaagtgcgcgtgttgaaaaccgcacggacttagataagctgatc
attgatgttgaaactgacggtacgcttgaagctgaagacagtattaaatatgctgcaact
atcttaagtgatcagttgacttcattcgttgactttacagtcattgaagaaagtgtatct
gaaccaaaacaaccagcagttgatccagcattattgcaagcaattgatgatcttgatctg
actgtcagatctgctaactgtttaaaagcagaaaatatttattatgtaggtgacttaatt
cagcgtacagaaatggaattgctgaaaacgccgaacttaggtaaaaagtcattaacggaa
attaaagaagtattggcttcaaaaggtttgtcattaggcatgcacttagataactggcca
cctgcttctttagagcaaaaataa
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