Methylophaga thalassica: VSX76_05440
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Entry
VSX76_05440 CDS
T09743
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VSX76_05440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mtha03019
]
VSX76_05440
03009 Ribosome biogenesis [BR:
mtha03009
]
VSX76_05440
Enzymes [BR:
mtha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VSX76_05440
Messenger RNA biogenesis [BR:
mtha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VSX76_05440
Ribosome biogenesis [BR:
mtha03009
]
Prokaryotic type
rRNA helicases
VSX76_05440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
AAA_30
Flavi_DEAD
GET4
Motif
Other DBs
NCBI-ProteinID:
WVI86055
LinkDB
All DBs
Position
1:complement(756503..758338)
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AA seq
611 aa
AA seq
DB search
MSTEQLDSIPSFSELGIAPAIVKAIKEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGK
TAAFSLPLLSRLNDRQKTPQILVLTPTRELAIQVAEAMQGYGRHMKNFHVLPVYGGQSMG
IQLRQLQRSPQVIVGTPGRILDLIRRGKLPLEDLKALVLDEADEMLRMGFIDDVETILKE
TPENRQVALFSATMPKPIHRVAQRYLKDPVDVHIQSKTSTVDTITQRYWQVTGLHKLDAL
TRILEVENFDGMIIFVRTKNATVDLSEKLEARGYASSPLNGDMNQALREKTIERMKAGKI
DILVATDVAARGLDIERMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVSPREKRM
LGAIEKATKQTITRMQLPSSEDIADRRVMVFKQDLTETIESQDLAFFENLIRQYQEEHNA
DPIEMAAALAFQVQKARPLNPPVVHSERKQPRERAERSDRPERANRGERGMRSERPPRAE
RSPRRQTSHQAEEGMKTYRIEVGTEQNVEPKHIVGAIANEAGMDSRMIGRITINQDHSLV
DLPDGMPKDIFQHLRKVWVNNKQLEISLPDSDADTSSARAERKPRRAGPPPAKTKKRPAI
AAKKQRKANRD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagaacaacttgactcgatcccctcatttagtgagttgggtatcgctcccgct
attgtcaaagcaatcaaagaagccggttacgaaacaccgtcacccattcaagcacaaagt
attacgcctttattagaaggtcgtgatttactgggccaggcccaaaccggtacaggtaaa
actgccgcgttttctctgcctctcttaagtcgtttgaatgaccgtcaaaagacacctcaa
attctggtactcaccccaacacgtgagttagctattcaagtcgcagaagcgatgcaaggc
tacggccgccatatgaaaaatttccatgttttacccgtttacggtggtcaaagcatgggg
attcaactacgccagttacaacgtagcccacaggttatcgtaggcacccctggtcgtatt
cttgatttgatccgtcgtggcaaattaccactcgaagatctgaaagcacttgtgctggac
gaagctgatgaaatgctgcgcatgggttttattgatgatgttgaaaccatactgaaagaa
acgccagaaaatcgtcaggttgctctgttctcagcaacaatgccaaaaccgatccatcgg
gtagctcagcgttatttaaaagatccagtggatgtccacatccagtcaaaaacatcgacg
gttgacacgatcacacagcgttactggcaagtcaccggtttgcataaactggatgcgctt
acccgtattctggaagtcgaaaacttcgatggcatgatcatctttgtccgcaccaaaaac
gcgaccgtagatctgtctgaaaagcttgaagctcgcggttatgccagctcaccgttaaat
ggtgatatgaatcaggctttacgtgaaaaaaccatcgaaagaatgaaagccggcaagatt
gatatcctggttgccaccgatgtggctgcacgtggtctggatattgagcgcatgagtcat
gtcgtcaattacgatattccttatgacactgaatcttacgttcaccgtatcggcagaaca
ggtcgtgccggtcgtaaaggtgaagccattttatttgtctcaccacgtgaaaaacgcatg
ttgggcgcgattgaaaaagcgaccaaacaaaccatcacccgcatgcaattaccaagcagt
gaagatattgctgatcgccgtgtcatggttttcaaacaagacttaacggaaactatcgag
tcacaggatttagccttttttgagaacctgattcgtcagtatcaggaagaacataatgca
gatccgattgaaatggccgccgcgttagcctttcaagtgcaaaaagcgcgtcccttaaat
cctcctgttgtccattcagagcgtaagcaacccagagagcgtgctgagcgtagtgaccgt
cctgaaagagcaaatcggggtgaacgtggtatgcgttcagaaagaccacccagagcagaa
cgtagtcctcgtcgccaaacgtctcatcaagctgaagaaggcatgaagacgtaccggatt
gaagtcggtacagaacaaaatgttgagcctaaacacattgtcggcgctattgccaatgaa
gctggcatggatagtcgcatgattggtcgtattacgattaatcaggatcacagtcttgtt
gatttaccagatggtatgccaaaagatatttttcagcatttaagaaaagtctgggtcaac
aataaacagcttgaaattagtctgcctgattcagatgctgatacttcttcagcaagagct
gaaagaaaaccacgccgcgccggaccaccgccagcaaaaacaaaaaaacgtccagccata
gccgcaaaaaagcaaagaaaagcgaatcgcgactaa
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