Methylophaga thalassica: VSX76_06845
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Entry
VSX76_06845 CDS
T09743
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
mtha
Methylophaga thalassica
Pathway
mtha02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VSX76_06845
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
mtha02022
]
VSX76_06845
02035 Bacterial motility proteins [BR:
mtha02035
]
VSX76_06845
Two-component system [BR:
mtha02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
VSX76_06845
Bacterial motility proteins [BR:
mtha02035
]
Pilus system
Twitching motility proteins
VSX76_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA_19
AAA_16
HTH_28
HTH_23
HTH_30
Pre_tape_measure
HTH_50
AAA_22
PGM_PMM_II
FleQ
Motif
Other DBs
NCBI-ProteinID:
WVI86326
LinkDB
All DBs
Position
1:1037780..1039132
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AA seq
450 aa
AA seq
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MNRQALVIDDEPDILELLTMTLSGMSIDCVTAESVAQANQALKQQSFDLCFTDMRLPDGN
GLDIVRTIQKTYPNCPVAVITAHGNIDLAVEALKSGAFDFVSKPLKLKVLRDLVNSALNL
SPSKSDVKERRSRDKLLGDTDVIRSLRNKISKLARSQAPVYITGESGTGKELVARLIHEL
GSRSDEAFVPINCGAIPAELVESEFFGHKKGAFTGAVADKQGLFQAANGGTLFLDEVADL
PLMMQVKLLRAIQEKAIRPVGGNEEISVDVRILSATHKNLAECVKQGSFREDLFYRLNVI
ELSVPPLRQRKADIPLLVEHILVQLAAKSGELKPVIGEDAISALREYAFPGNVRELENIL
ERAMTWSDGSVIHEADLMLPEAPLNSLSADEPGFSLTADKVDLESQLEDQERQLIVDALE
STRWNKTAAAKKLGISFRSLRYKLKKLALD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgaacagacaagcgttagtcatagatgatgaacccgatatccttgaactgttaacaatg
acattgtcaggtatgtcgattgattgtgtgacggcggagagtgttgcccaagccaatcag
gcattaaaacaacaatcttttgatctttgttttactgatatgcgattacctgatggtaac
ggtttggatattgtccgcactattcaaaaaacttatccaaattgtcccgtggcggttatc
actgcgcacggtaatattgatttggctgttgaagcgcttaaatcaggcgccttcgatttt
gtatcaaaaccacttaagcttaaagtcttacgtgatttagtgaactcagcattaaattta
tctccgtcaaagtcagatgtaaaagagcgccgttctagggataaattactcggggatacc
gatgttattcgctctttgagaaataaaatcagtaaattagctcgcagtcaggcacctgtt
tatatcacgggggagtcaggtacaggcaaagagcttgtcgcacgtttaattcatgagtta
ggcagtcgttctgatgaggcttttgtgccgattaattgcggtgctatcccggcagaatta
gtggaaagtgagttttttggacataaaaaaggcgcttttacgggcgctgttgctgataaa
cagggtttatttcaggcggctaacggcggtacgttgtttctggatgaagtcgctgatttg
ccattaatgatgcaggtgaagttactaagagcgattcaggaaaaagccattagacctgtt
ggtggcaatgaagaaattagcgttgacgttcgaatattgtcggcaacccataaaaatctg
gcggaatgtgtaaaacaaggtagtttccgtgaagacttgttttaccgtttgaacgttatt
gaactttcagtgccaccgctcagacaacgtaaagcggatattcctctgttagtcgagcat
attcttgtgcagcttgcggctaaaagtggtgagctaaaaccagtgattggtgaggatgcc
attagtgccttacgtgaatatgccttccctggcaatgtacgcgaacttgaaaatatcctg
gaaagagcgatgacatggtctgatggctcggttattcacgaagcagatttaatgttgcct
gaagcacctctaaatagtctatcagccgatgagcccggctttagtctaacagcagataaa
gttgacctagaatcacaactggaagatcaggagcggcagcttattgttgatgcgctggag
tcaacgcgttggaataagacggccgctgcaaaaaagcttggcattagtttccgttcttta
cgctataaactaaaaaaactggcattggattag
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