Methylophaga thalassica: VSX76_12570
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Entry
VSX76_12570 CDS
T09743
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mtha
Methylophaga thalassica
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mtha03032
]
VSX76_12570
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_12570
Enzymes [BR:
mtha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
VSX76_12570
DNA replication proteins [BR:
mtha03032
]
Prokaryotic type
DNA Topoisomerases
VSX76_12570
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
VSX76_12570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WVI84601
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All DBs
Position
1:complement(2282641..2283648)
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AA seq
335 aa
AA seq
DB search
MKLTDMYYRRKHGTGFTYIDEQNKTVKDKSIREWFTSLVIPPAWTDVEISEDKKADILAT
GRDAKNRKQYIYNPDIQEKHNQEKFDRIIRFAEQLEHMRRVTGQHLRQRKMSREKVLSTM
LRLMDQAYFRPGSPRYTEENNTYGLTTLRKKHVEINDDEIIFSYLGKSGQEQERHVEDKK
LANAIKNLDDIPGYRLFKYYDENNNKKEVEASELNDFIHECMGEDFSAKDFRTWAGTMIA
ALAFDELGTVSKEDQASLDKNIKSVVVSVSEQLGNTPAVAKSAYIDPRVIDNYIEGKTAH
YFLDQVKHLIKDNQNLSEEELSVLCMLRESLKKKS
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattaactgatatgtactatagaagaaaacatggcacgggttttacctacattgat
gaacagaataaaacggtaaaagataaatccataagagagtggttcaccagcttggtaata
ccacctgcatggactgatgttgaaatatcagaggataaaaaagccgatatcttagcgact
ggaagggatgctaaaaatagaaaacaatatatttacaatcctgatattcaagaaaaacat
aaccaagaaaaatttgaccgtatcattcgttttgctgagcaattagagcatatgcggcgt
gtcacaggccaacatttacgacaacgtaagatgtcgagagaaaaagtattatccaccatg
ctacgtctaatggaccaagcgtattttcgacctggtagccctagatatactgaagaaaac
aatacgtatggtttaaccacgctacgaaaaaagcatgtagaaattaatgacgacgaaatt
atattttcgtatctgggtaagtctggtcaggaacaggaacgtcatgtcgaagataaaaag
ttagccaatgctattaaaaacttagatgatattcctggttatcgcctgtttaaatactat
gatgaaaataacaataaaaaagaagttgaagccagtgagcttaacgatttcattcatgag
tgtatgggggaggatttttcagcgaaagatttcaggacatgggcgggcactatgatcgct
gcattggccttcgatgagctcggcacagtcagcaaagaagaccaagcatcgcttgataag
aatatcaaatcagtggtcgttagtgtttctgagcagttgggtaatactcccgctgttgca
aaaagtgcttatattgatcccagagtcattgataattacattgagggtaaaacagcacat
tatttcttagatcaagtgaaacacttaataaaagacaatcaaaatttgtcggaagaagag
ttaagtgtgttgtgtatgctaagagagagtttaaagaaaaagtcttaa
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