Methylophaga thalassica: VSX76_12755
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Entry
VSX76_12755 CDS
T09743
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VSX76_12755 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_12755 (recD)
Enzymes [BR:
mtha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VSX76_12755 (recD)
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSX76_12755 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
UvrD_C_2
RecD_N
AAA_11
SLFN-g3_helicase
SH3_13
AAA_22
Helicase_RecD
AAA_16
UvrD_C
UvrD-helicase
PIF1
nSTAND3
AAA
Herpes_Helicase
DEAD
NPHP3_N
TrwB_AAD_bind
GvpD_P-loop
AAA_7
AAA_28
NTPase_1
Pox_A32
DnaB_C
AAA_5
CbiA
Motif
Other DBs
NCBI-ProteinID:
WVI84638
LinkDB
All DBs
Position
1:complement(2322165..2323913)
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AA seq
582 aa
AA seq
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MSDLLKLLRQHGLSELACQFAAYIDRKEQGMRPVVSMTAAILSEAIAEGHVCLNLHQLPT
FCQPLKSVLPDSVADWMEILSQAKTVGQPGDYTPLILTEQGLVYLYRYYRDEQDVARLIQ
QRLQPIDNIDIEQLNADLGRWTSVIDGTDWQKVAVAVALTRQFAVISGGPGTGKTTIVLS
MLNSLQQQFPDLHIGLAAPTGKAAARLQQSISAQHPYEVKTLHRLLGITEHNDQGRYHAE
RHLPLDVLIIDEASMIDISLMAKLMRALSPSARLILLGDSQQLASVESGAVLANLSDEQQ
GQFSAEFSEQFPELEIPVKENSTPSTLLNSFVRLQHSYRFDKDSAIGQLAKQVNEGDVLA
ALALLNPSVNDIWSDSDEKQQQRCFMAGYQRFIEAVESKQSPQQVVQAFDTFRILAALKQ
GPQSVLSVNRLLMRLLAQRGWRTSLPFYAGRPIMITQNDYRQRLFNGDTGIILHDETGQL
RACFCFDEEVRWVPINRLPAHETAFAMTVHKSQGSEFDSVSILLPDEISPILNRELLYTA
ITRAKQQVFILSKEVTLRHTIQTRHQRESGLKRHLMDEHQNH
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatttgctgaagttattacgccagcacggtttaagcgaattagcctgtcagttt
gccgcctatattgatcgtaaagaacagggcatgcgtccggtggtgagcatgacggcagcc
atattgtcagaagcgattgctgaaggacacgtgtgtctgaatttgcatcaactccccaca
ttttgtcagcccttaaaatcggtattacctgattctgttgctgactggatggaaatattg
tcacaggccaaaacagtcggtcagcccggtgattacacgccactgattttgacagaacaa
ggcctggtttatctttaccgttattatcgtgatgagcaggatgtggcccggctgattcag
caacgtttacagccgattgataatatcgatatagaacaactcaatgctgatttagggcgt
tggaccagtgtgattgacggtacagactggcaaaaagtcgctgtcgctgtggcattaacc
agacaatttgcggttatctctggtggccccggcacgggtaaaaccaccattgttttaagt
atgctcaatagtttgcaacagcaatttcctgatctacatattgggctggcggcacccaca
ggtaaagcggctgccagactgcagcaatcgattagtgcccagcatccctatgaagtaaaa
acgttacaccgcttattgggaattactgagcataatgatcaggggcgttatcatgctgag
cgtcatttaccgttagatgtgttgatcattgacgaagcctcaatgatcgatatcagtttg
atggcgaaattaatgcgggctttatcgccttcagccagactgattttattaggtgacagc
caacaattggcctcagttgagtctggtgcggtgttagcgaatttgagtgatgaacaacaa
ggccagttttcggctgagttcagtgagcaatttcccgaactagagattccggtcaaagaa
aactcaacgccatccacactgctaaatagctttgtgcgtctgcaacacagttatcgtttc
gataaagacagtgctattggccaattagccaaacaggtgaatgaaggtgatgtgctggca
gcgctcgctttattaaatccaagcgtgaatgatatctggtcggatagtgatgaaaaacaa
cagcaaagatgctttatggctggataccaacgctttattgaggcggtggaatccaaacag
tcaccacaacaagtagtacaggcctttgatacgttcagaattctggctgcactaaagcaa
gggccacaatccgtgttatcagtgaatcgtttgctgatgcgcttattagcacaacgcggt
tggcgaaccagcttaccgttttacgctggcaggccgattatgatcacccaaaatgattac
cggcaacgactgtttaatggcgacacgggcatcattctgcatgatgagacaggacaactt
cgcgcctgtttttgttttgatgaggaagtgcgttgggtacccattaatcgactccctgct
catgaaaccgcctttgcgatgacggtgcataaaagtcaaggctctgaatttgatagcgtt
agtattttattgccggatgaaatcagtcctatccttaatcgtgaactactttacaccgcg
attacccgagccaaacagcaggtatttatccttagtaaagaagtgacattacgtcacacg
attcaaacccgacatcaacgtgagagtggcttgaaaaggcacttgatggatgaacatcaa
aatcactga
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