Methylophaga thalassica: VSX76_12760
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Entry
VSX76_12760 CDS
T09743
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mtha
Methylophaga thalassica
Pathway
mtha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mtha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VSX76_12760 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mtha03400
]
VSX76_12760 (recB)
Enzymes [BR:
mtha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VSX76_12760 (recB)
DNA repair and recombination proteins [BR:
mtha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VSX76_12760 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_12
AAA_11
SLFN-g3_helicase
ResIII
Terminase_6N
Helicase_RecD
Glyco_hydro2_C5
Motif
Other DBs
NCBI-ProteinID:
WVI84639
LinkDB
All DBs
Position
1:complement(2323906..2327391)
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AA seq
1161 aa
AA seq
DB search
MSAQFNVDTVALKGINLIEASAGTGKTFTLAELYCRLVVEQKLEVNQILVVTYTRAATEE
LRGRLRARLVDERKQLSQQAQADPQAIKRLQLAIQSFDEAAIYTIHGFCQRALQDFAFES
GHFFDMEMVADEQELKQAVADDFWRRYVSSADNAFARYLLQKRQSPEVLLQSVSSLIGKP
YLEVIPLPEMAVEPLQALYDKQFEHVQSLWWQQRDEAIAVLQDKNVLNGNKYRAASVSGW
IAEMDSLMQAGKQAGLFEKFAKFGQAELTQALKKGQELPELSLWRACDALLDTDQQLQTA
RSLQLQQLRQLLSEYLATELPKRKQQLKLQAFDDLLLNLQQALHGTQADKLIAKIREQFQ
AALIDEFQDTDPIQYDCFHTIFANTEQPVFFVGDPKQAIYSFRGADIFTYLKAKHAAGNE
FNLDTNWRSHPRLVKAVNHLFERVPQPFLYDDIPFYPVKAARADEACLTVSGQAVSPLSW
VWMSSDTPFNVSDMMQNAANVTADQIATLLNQSASDEVMLTDKDGRQRQLNGGDIAVLVR
SHKQATTIQQTLRARGVNSVQQSRDSVFETPQAVMLERVLMAIAQPSNDSLIATALATPL
FAKSALDIYQAQQDEQQWLKQTDFFVSLHEQWQQAGFIVMFRALLAALDVQRHWLALADG
ERQLTNLLHLAELIQAHATRRNNTMEAILMWLASQRQSADKSGDAAQIRLESDEQLVKVI
TIHTSKGLEYPIVFCPFLWHQSQFNQQPTVMTFHRADDNQACVAFGEPGFSEAQPIMAEE
QQAEDLRLLYVALTRAREQCVIVWAPVKNVQQSALFQLLHPELEHVDAGEMQQSLQQMVA
SQQDNMNVITWDADVPPVVKQADVSAQTLQARLFAGQIQTPWHIGSFTGLSHGQHIELPD
HDAPLLPVDMPSSEQRQDRFGFPKGANAGTCLHSLFEHWDFQQQNEELTSLVDKTLSQFG
IDNEWSTVVSSWLDAVVSTKLNQQTGLTLRDIQPQQRLDEMAFFFPVRQLTAKRLKQTLM
PFVDDYPILSPVVKSLQFVDLSGFMKGFIDLVFEHEGRFYIADYKSNWLGTQADNYRQAA
LDEAMVAHSYPLQYLIYSLALHRYLQTRLPDYDPKQHFGGVYYLFIRGMHPDWGQAGVYF
ERPSTALLEALDRCMSEVDDV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcccaatttaatgtggacacggttgcactcaaaggcattaatctaattgaagcc
agtgccggcaccggtaaaacctttaccttggcagaactgtattgtcgtttagtcgttgag
cagaaactggaagtcaaccagattctggtagtgacttacactcgtgcagctaccgaagag
ttacgtggacgtttaagggcacgactggttgatgaacgtaaacaactgagccaacaagca
caggcagatcctcaggcgataaaacgtttacaactggcgattcagagttttgatgaagcc
gctatttacaccattcatggtttttgccaacgcgctttgcaggactttgcgtttgaaagc
ggtcatttctttgatatggaaatggtggccgatgaacaggaactcaaacaagcggttgct
gacgatttctggcgtcgttatgtcagctcggcagataacgcttttgcccgttatttatta
caaaaacgccaaagcccggaagtgttattgcagtcagtcagcagcttgattggcaaaccc
tatcttgaagtcataccgctgccggaaatggcggtggagccattacaagctctatatgat
aagcagtttgaacacgtacagtcgctgtggtggcaacagcgtgatgaagcgattgcggtt
ttgcaggataaaaacgtgcttaacggtaataaatatcgtgctgccagtgtcagtggctgg
atagctgaaatggacagcctgatgcaggccggaaaacaagctggtttgtttgagaagttt
gccaagtttggtcaggctgaactgacacaggcgctgaaaaagggacaggagctacctgaa
ctgagtttatggcgggcatgtgatgccttgctcgataccgaccaacaactgcaaacggcg
cgttcattacaattgcagcaactacgtcagctattatcagagtatctcgccactgagtta
cccaaacgtaaacagcaattaaaactgcaggcctttgatgatttgttacttaatctgcaa
caggccttacatggcacgcaagccgataagctgatcgctaaaattcgtgagcagtttcag
gcggcattgattgatgagtttcaggacaccgatccgattcaatacgactgttttcatacg
atttttgccaacaccgagcagccggtgttttttgttggcgacccaaaacaggcgatttac
agtttccgtggcgctgatatttttacttatctgaaagcaaaacatgcagctggcaatgag
tttaatctggataccaactggcgttcgcatccacgtctggtgaaggcggttaatcattta
tttgaacgcgtgccacagccgtttttgtatgacgatattccgttttatccagtgaaagcg
gctcgtgctgatgaggcgtgtttaacggtgtcaggccaggctgtgtcgccgctatcatgg
gtatggatgtcatctgacacgccatttaatgttagcgatatgatgcaaaatgcggcaaat
gtgactgccgatcagatcgcaactttgttaaatcagtcagccagcgatgaggtaatgctg
acagataaagatggccgtcaacgtcagctcaatggcggtgatattgccgtcttagtcaga
agccataaacaggcaacaaccattcagcagacactacgggcacgtggtgtgaacagtgtg
cagcagtcacgtgacagtgtgtttgaaacaccgcaggcggtgatgctggaacgggtgtta
atggcgattgctcaacccagtaatgacagcctgattgccacggctttagcaaccccctta
tttgctaaaagtgcattagacatttatcaggctcagcaagacgaacagcagtggctgaag
cagacagacttttttgtctcgctgcatgagcaatggcagcaggccggttttattgtgatg
ttccgtgccttactggctgcactggatgtgcaacgtcactggttagccttagctgatggt
gaacggcaactgaccaatttattgcatttggctgaattgattcaggcgcatgcaacgcga
cgcaataatacgatggaagctattttgatgtggttagcttcacagcgacagtctgctgat
aaaagtggggatgccgctcagattcggctggaaagtgatgaacaactggtcaaagtgatt
accattcacactagtaaagggctggaatacccgattgtgttttgtccgttcctctggcat
caaagccagttcaatcaacagccgacagtgatgacgtttcatcgagcagacgataatcag
gcctgtgttgcctttggcgagcctggtttttctgaagcacaaccgattatggctgaagag
cagcaagctgaagacttacgtctgctttatgtggcattaacccgtgctcgtgaacagtgc
gtgattgtgtgggcacccgtgaaaaacgttcagcaaagcgccttatttcagttgcttcat
cctgagttagaacacgttgatgccggagaaatgcaacaaagtttgcagcagatggtggca
tcacagcaagacaatatgaacgtgattacctgggatgcggatgtgccaccggttgtcaaa
caggcggatgtgtcagcacagacactacaagcgaggctgtttgcaggacagattcagaca
ccctggcatattggaagctttaccggtctgagccacgggcagcatatcgagttaccggat
catgatgcacccttgctgccagtagacatgccaagcagtgaacaacgtcaggatcggttt
gggtttccaaaaggtgcgaatgccggtacctgtttacatagcttgtttgaacactgggac
ttccagcagcagaatgaagaactcaccagcttggtagacaaaacgttaagccagtttggc
attgataatgagtggtctactgtcgtttcatcctggttggatgccgtggtcagtactaaa
ttaaatcagcaaaccgggctgactttacgtgatattcagccgcagcagcgtttagatgaa
atggcatttttctttccagtcagacagttaacagcaaaacgtttaaaacagacattaatg
ccttttgtcgacgattatccgattctcagtccggtggtgaagtcattacaatttgtcgat
cttagcggctttatgaaaggctttatcgatctggtgtttgagcatgaggggcgtttttat
attgctgactataaatccaactggttaggaactcaggctgataattatcggcaggccgcg
ttagatgaggccatggtggctcatagctatccgctgcaatatttaatttacagcttggca
ttacatcgttatctgcaaacgcgtctgcctgattacgatcctaagcagcattttggcggt
gtgtattacttatttatacgcggtatgcatccggattgggggcaagcaggtgtgtatttt
gaacgtccatcgactgccttattagaagcgctcgaccgttgcatgtctgaggtggacgat
gtctga
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